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SKA2 (spindle and kinetochore associated complex subunit 2)

Identity

Alias_namesFAM33A
family with sequence similarity 33
Alias_symbol (synonym)FLJ12758
Other alias
HGNC (Hugo) SKA2
LocusID (NCBI) 348235
Atlas_Id 54621
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 59109947 and ends at 59155439 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SKA2 (17q22) / GNAS (20q13.32)SKA2 (17q22) / MYO19 (17q12)TRIM37 (17q22) / SKA2 (17q22)
TRIM37 17q22 / SKA2 17q22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SKA2   28006
Cards
Entrez_Gene (NCBI)SKA2  348235  spindle and kinetochore associated complex subunit 2
AliasesFAM33A
GeneCards (Weizmann)SKA2
Ensembl hg19 (Hinxton)ENSG00000182628 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182628 [Gene_View]  chr17:59109947-59155439 [Contig_View]  SKA2 [Vega]
ICGC DataPortalENSG00000182628
TCGA cBioPortalSKA2
AceView (NCBI)SKA2
Genatlas (Paris)SKA2
WikiGenes348235
SOURCE (Princeton)SKA2
Genetics Home Reference (NIH)SKA2
Genomic and cartography
GoldenPath hg38 (UCSC)SKA2  -     chr17:59109947-59155439 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SKA2  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblSKA2 - 17q22 [CytoView hg19]  SKA2 - 17q22 [CytoView hg38]
Mapping of homologs : NCBISKA2 [Mapview hg19]  SKA2 [Mapview hg38]
OMIM616674   
Gene and transcription
Genbank (Entrez)AK022820 AK056473 BC017873 BC106003 BQ019350
RefSeq transcript (Entrez)NM_001100595 NM_001330399 NM_182620
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SKA2
Cluster EST : UnigeneHs.463607 [ NCBI ]
CGAP (NCI)Hs.463607
Alternative Splicing GalleryENSG00000182628
Gene ExpressionSKA2 [ NCBI-GEO ]   SKA2 [ EBI - ARRAY_EXPRESS ]   SKA2 [ SEEK ]   SKA2 [ MEM ]
Gene Expression Viewer (FireBrowse)SKA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348235
GTEX Portal (Tissue expression)SKA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVK7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVK7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVK7
Splice isoforms : SwissVarQ8WVK7
PhosPhoSitePlusQ8WVK7
Domains : Interpro (EBI)Ska2   
Domain families : Pfam (Sanger)SKA2 (PF16740)   
Domain families : Pfam (NCBI)pfam16740   
Conserved Domain (NCBI)SKA2
DMDM Disease mutations348235
Blocks (Seattle)SKA2
PDB (SRS)4AJ5   
PDB (PDBSum)4AJ5   
PDB (IMB)4AJ5   
PDB (RSDB)4AJ5   
Structural Biology KnowledgeBase4AJ5   
SCOP (Structural Classification of Proteins)4AJ5   
CATH (Classification of proteins structures)4AJ5   
SuperfamilyQ8WVK7
Human Protein AtlasENSG00000182628
Peptide AtlasQ8WVK7
HPRD13306
IPIIPI00103149   IPI00789288   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVK7
IntAct (EBI)Q8WVK7
FunCoupENSG00000182628
BioGRIDSKA2
STRING (EMBL)SKA2
ZODIACSKA2
Ontologies - Pathways
QuickGOQ8WVK7
Ontology : AmiGOmitotic cell cycle  condensed chromosome outer kinetochore  protein binding  cytosol  spindle microtubule  chromosome segregation  sister chromatid cohesion  microtubule binding  regulation of microtubule polymerization or depolymerization  cell division  
Ontology : EGO-EBImitotic cell cycle  condensed chromosome outer kinetochore  protein binding  cytosol  spindle microtubule  chromosome segregation  sister chromatid cohesion  microtubule binding  regulation of microtubule polymerization or depolymerization  cell division  
NDEx NetworkSKA2
Atlas of Cancer Signalling NetworkSKA2
Wikipedia pathwaysSKA2
Orthology - Evolution
OrthoDB348235
GeneTree (enSembl)ENSG00000182628
Phylogenetic Trees/Animal Genes : TreeFamSKA2
HOVERGENQ8WVK7
HOGENOMQ8WVK7
Homologs : HomoloGeneSKA2
Homology/Alignments : Family Browser (UCSC)SKA2
Gene fusions - Rearrangements
Fusion: TCGATRIM37 17q22 SKA2 17q22 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSKA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SKA2
dbVarSKA2
ClinVarSKA2
1000_GenomesSKA2 
Exome Variant ServerSKA2
ExAC (Exome Aggregation Consortium)SKA2 (select the gene name)
Genetic variants : HAPMAP348235
Genomic Variants (DGV)SKA2 [DGVbeta]
DECIPHERSKA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSKA2 
Mutations
ICGC Data PortalSKA2 
TCGA Data PortalSKA2 
Broad Tumor PortalSKA2
OASIS PortalSKA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSKA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSKA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SKA2
DgiDB (Drug Gene Interaction Database)SKA2
DoCM (Curated mutations)SKA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SKA2 (select a term)
intoGenSKA2
Cancer3DSKA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616674   
Orphanet
MedgenSKA2
Genetic Testing Registry SKA2
NextProtQ8WVK7 [Medical]
TSGene348235
GENETestsSKA2
Target ValidationSKA2
Huge Navigator SKA2 [HugePedia]
snp3D : Map Gene to Disease348235
BioCentury BCIQSKA2
ClinGenSKA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348235
Chemical/Pharm GKB GenePA165432792
Clinical trialSKA2
Miscellaneous
canSAR (ICR)SKA2 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSKA2
EVEXSKA2
GoPubMedSKA2
iHOPSKA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:55:37 CEST 2017

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