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SKA3 (spindle and kinetochore associated complex subunit 3)

Identity

Alias_namesC13orf3
chromosome 13 open reading frame 3
Alias_symbol (synonym)MGC4832
RAMA1
Other alias
HGNC (Hugo) SKA3
LocusID (NCBI) 221150
Atlas_Id 54622
Location 13q12.11  [Link to chromosome band 13q12]
Location_base_pair Starts at 21153595 and ends at 21176602 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDX10 (11q22.3) / SKA3 (13q12.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SKA3   20262
Cards
Entrez_Gene (NCBI)SKA3  221150  spindle and kinetochore associated complex subunit 3
AliasesC13orf3; RAMA1
GeneCards (Weizmann)SKA3
Ensembl hg19 (Hinxton)ENSG00000165480 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165480 [Gene_View]  chr13:21153595-21176602 [Contig_View]  SKA3 [Vega]
ICGC DataPortalENSG00000165480
TCGA cBioPortalSKA3
AceView (NCBI)SKA3
Genatlas (Paris)SKA3
WikiGenes221150
SOURCE (Princeton)SKA3
Genetics Home Reference (NIH)SKA3
Genomic and cartography
GoldenPath hg38 (UCSC)SKA3  -     chr13:21153595-21176602 -  13q12.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SKA3  -     13q12.11   [Description]    (hg19-Feb_2009)
EnsemblSKA3 - 13q12.11 [CytoView hg19]  SKA3 - 13q12.11 [CytoView hg38]
Mapping of homologs : NCBISKA3 [Mapview hg19]  SKA3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF361358 AK090584 AK307976 AK314864 BC013418
RefSeq transcript (Entrez)NM_001166017 NM_145061
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SKA3
Cluster EST : UnigeneHs.88523 [ NCBI ]
CGAP (NCI)Hs.88523
Alternative Splicing GalleryENSG00000165480
Gene ExpressionSKA3 [ NCBI-GEO ]   SKA3 [ EBI - ARRAY_EXPRESS ]   SKA3 [ SEEK ]   SKA3 [ MEM ]
Gene Expression Viewer (FireBrowse)SKA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221150
GTEX Portal (Tissue expression)SKA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IX90   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IX90  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IX90
Splice isoforms : SwissVarQ8IX90
PhosPhoSitePlusQ8IX90
Domains : Interpro (EBI)SKA3   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SKA3
DMDM Disease mutations221150
Blocks (Seattle)SKA3
PDB (SRS)4AJ5   
PDB (PDBSum)4AJ5   
PDB (IMB)4AJ5   
PDB (RSDB)4AJ5   
Structural Biology KnowledgeBase4AJ5   
SCOP (Structural Classification of Proteins)4AJ5   
CATH (Classification of proteins structures)4AJ5   
SuperfamilyQ8IX90
Human Protein AtlasENSG00000165480
Peptide AtlasQ8IX90
HPRD10706
IPIIPI00333014   IPI00472738   IPI00789249   IPI01009787   IPI01010996   
Protein Interaction databases
DIP (DOE-UCLA)Q8IX90
IntAct (EBI)Q8IX90
FunCoupENSG00000165480
BioGRIDSKA3
STRING (EMBL)SKA3
ZODIACSKA3
Ontologies - Pathways
QuickGOQ8IX90
Ontology : AmiGOmitotic cell cycle  kinetochore  condensed chromosome outer kinetochore  protein binding  cytoplasm  spindle microtubule  chromosome segregation  regulation of microtubule polymerization or depolymerization  cell division  
Ontology : EGO-EBImitotic cell cycle  kinetochore  condensed chromosome outer kinetochore  protein binding  cytoplasm  spindle microtubule  chromosome segregation  regulation of microtubule polymerization or depolymerization  cell division  
NDEx NetworkSKA3
Atlas of Cancer Signalling NetworkSKA3
Wikipedia pathwaysSKA3
Orthology - Evolution
OrthoDB221150
GeneTree (enSembl)ENSG00000165480
Phylogenetic Trees/Animal Genes : TreeFamSKA3
HOVERGENQ8IX90
HOGENOMQ8IX90
Homologs : HomoloGeneSKA3
Homology/Alignments : Family Browser (UCSC)SKA3
Gene fusions - Rearrangements
Fusion : MitelmanDDX10/SKA3 [11q22.3/13q12.11]  [t(11;13)(q22;q12)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSKA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SKA3
dbVarSKA3
ClinVarSKA3
1000_GenomesSKA3 
Exome Variant ServerSKA3
ExAC (Exome Aggregation Consortium)SKA3 (select the gene name)
Genetic variants : HAPMAP221150
Genomic Variants (DGV)SKA3 [DGVbeta]
DECIPHERSKA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSKA3 
Mutations
ICGC Data PortalSKA3 
TCGA Data PortalSKA3 
Broad Tumor PortalSKA3
OASIS PortalSKA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSKA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSKA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SKA3
DgiDB (Drug Gene Interaction Database)SKA3
DoCM (Curated mutations)SKA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SKA3 (select a term)
intoGenSKA3
Cancer3DSKA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSKA3
Genetic Testing Registry SKA3
NextProtQ8IX90 [Medical]
TSGene221150
GENETestsSKA3
Target ValidationSKA3
Huge Navigator SKA3 [HugePedia]
snp3D : Map Gene to Disease221150
BioCentury BCIQSKA3
ClinGenSKA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221150
Chemical/Pharm GKB GenePA165505498
Clinical trialSKA3
Miscellaneous
canSAR (ICR)SKA3 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSKA3
EVEXSKA3
GoPubMedSKA3
iHOPSKA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:55:37 CEST 2017

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