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SKIDA1 (SKI/DACH domain containing 1)

Identity

Alias_namesC10orf140
chromosome 10 open reading frame 140
Alias_symbol (synonym)FLJ45187
Other aliasDLN-1
HGNC (Hugo) SKIDA1
LocusID (NCBI) 387640
Atlas_Id 73261
Location 10p12.31  [Link to chromosome band 10p12]
Location_base_pair Starts at 21513480 and ends at 21525682 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NEBL (10p12.31) / SKIDA1 (10p12.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SKIDA1   32697
Cards
Entrez_Gene (NCBI)SKIDA1  387640  SKI/DACH domain containing 1
AliasesC10orf140; DLN-1
GeneCards (Weizmann)SKIDA1
Ensembl hg19 (Hinxton)ENSG00000180592 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180592 [Gene_View]  chr10:21513480-21525682 [Contig_View]  SKIDA1 [Vega]
ICGC DataPortalENSG00000180592
TCGA cBioPortalSKIDA1
AceView (NCBI)SKIDA1
Genatlas (Paris)SKIDA1
WikiGenes387640
SOURCE (Princeton)SKIDA1
Genetics Home Reference (NIH)SKIDA1
Genomic and cartography
GoldenPath hg38 (UCSC)SKIDA1  -     chr10:21513480-21525682 -  10p12.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SKIDA1  -     10p12.31   [Description]    (hg19-Feb_2009)
EnsemblSKIDA1 - 10p12.31 [CytoView hg19]  SKIDA1 - 10p12.31 [CytoView hg38]
Mapping of homologs : NCBISKIDA1 [Mapview hg19]  SKIDA1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB234866 AK127130 AK131456 AK303207 AL834446
RefSeq transcript (Entrez)NM_207371
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SKIDA1
Cluster EST : UnigeneHs.694676 [ NCBI ]
CGAP (NCI)Hs.694676
Alternative Splicing GalleryENSG00000180592
Gene ExpressionSKIDA1 [ NCBI-GEO ]   SKIDA1 [ EBI - ARRAY_EXPRESS ]   SKIDA1 [ SEEK ]   SKIDA1 [ MEM ]
Gene Expression Viewer (FireBrowse)SKIDA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387640
GTEX Portal (Tissue expression)SKIDA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1XH10   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1XH10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1XH10
Splice isoforms : SwissVarQ1XH10
PhosPhoSitePlusQ1XH10
Domains : Interpro (EBI)DNA-bd_dom_put    DUF4584    Transform_Ski   
Domain families : Pfam (Sanger)DUF4584 (PF15223)    Ski_Sno (PF02437)   
Domain families : Pfam (NCBI)pfam15223    pfam02437   
Conserved Domain (NCBI)SKIDA1
DMDM Disease mutations387640
Blocks (Seattle)SKIDA1
SuperfamilyQ1XH10
Human Protein AtlasENSG00000180592
Peptide AtlasQ1XH10
HPRD16981
IPIIPI00166533   IPI00413984   IPI00982484   
Protein Interaction databases
DIP (DOE-UCLA)Q1XH10
IntAct (EBI)Q1XH10
FunCoupENSG00000180592
BioGRIDSKIDA1
STRING (EMBL)SKIDA1
ZODIACSKIDA1
Ontologies - Pathways
QuickGOQ1XH10
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSKIDA1
Atlas of Cancer Signalling NetworkSKIDA1
Wikipedia pathwaysSKIDA1
Orthology - Evolution
OrthoDB387640
GeneTree (enSembl)ENSG00000180592
Phylogenetic Trees/Animal Genes : TreeFamSKIDA1
HOVERGENQ1XH10
HOGENOMQ1XH10
Homologs : HomoloGeneSKIDA1
Homology/Alignments : Family Browser (UCSC)SKIDA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSKIDA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SKIDA1
dbVarSKIDA1
ClinVarSKIDA1
1000_GenomesSKIDA1 
Exome Variant ServerSKIDA1
ExAC (Exome Aggregation Consortium)SKIDA1 (select the gene name)
Genetic variants : HAPMAP387640
Genomic Variants (DGV)SKIDA1 [DGVbeta]
DECIPHERSKIDA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSKIDA1 
Mutations
ICGC Data PortalSKIDA1 
TCGA Data PortalSKIDA1 
Broad Tumor PortalSKIDA1
OASIS PortalSKIDA1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSKIDA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SKIDA1
DgiDB (Drug Gene Interaction Database)SKIDA1
DoCM (Curated mutations)SKIDA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SKIDA1 (select a term)
intoGenSKIDA1
Cancer3DSKIDA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSKIDA1
Genetic Testing Registry SKIDA1
NextProtQ1XH10 [Medical]
TSGene387640
GENETestsSKIDA1
Target ValidationSKIDA1
Huge Navigator SKIDA1 [HugePedia]
snp3D : Map Gene to Disease387640
BioCentury BCIQSKIDA1
ClinGenSKIDA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387640
Chemical/Pharm GKB GenePA162377645
Clinical trialSKIDA1
Miscellaneous
canSAR (ICR)SKIDA1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSKIDA1
EVEXSKIDA1
GoPubMedSKIDA1
iHOPSKIDA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:51 CEST 2017

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