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SKINTL (Skint-like, pseudogene)

Identity

Other aliasBTN12
SKINT1
SKINTP
HGNC (Hugo) SKINTL
LocusID (NCBI) 391037
Atlas_Id 73262
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 48567387 and ends at 48648100 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SKINTL   33993
Cards
Entrez_Gene (NCBI)SKINTL  391037  Skint-like, pseudogene
AliasesBTN12; SKINT1; SKINTP
GeneCards (Weizmann)SKINTL
Ensembl hg19 (Hinxton) [Gene_View]  chr1:48567387-48648100 [Contig_View]  SKINTL [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:48567387-48648100 [Contig_View]  SKINTL [Vega]
TCGA cBioPortalSKINTL
AceView (NCBI)SKINTL
Genatlas (Paris)SKINTL
WikiGenes391037
SOURCE (Princeton)SKINTL
Genetics Home Reference (NIH)SKINTL
Genomic and cartography
GoldenPath hg19 (UCSC)SKINTL  -     chr1:48567387-48648100 -  1p33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SKINTL  -     1p33   [Description]    (hg38-Dec_2013)
EnsemblSKINTL - 1p33 [CytoView hg19]  SKINTL - 1p33 [CytoView hg38]
Mapping of homologs : NCBISKINTL [Mapview hg19]  SKINTL [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX118767 DN994130
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)SKINTL
Cluster EST : UnigeneHs.585393 [ NCBI ]
CGAP (NCI)Hs.585393
Gene ExpressionSKINTL [ NCBI-GEO ]   SKINTL [ EBI - ARRAY_EXPRESS ]   SKINTL [ SEEK ]   SKINTL [ MEM ]
Gene Expression Viewer (FireBrowse)SKINTL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)391037
GTEX Portal (Tissue expression)SKINTL
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MVG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MVG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MVG2
Splice isoforms : SwissVarA8MVG2
PhosPhoSitePlusA8MVG2
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)CD80_C2-set    Ig-like_dom    Ig-like_fold   
Domain families : Pfam (Sanger)C2-set_2 (PF08205)   
Domain families : Pfam (NCBI)pfam08205   
Conserved Domain (NCBI)SKINTL
DMDM Disease mutations391037
Blocks (Seattle)SKINTL
SuperfamilyA8MVG2
Peptide AtlasA8MVG2
IPIIPI00457305   
Protein Interaction databases
DIP (DOE-UCLA)A8MVG2
IntAct (EBI)A8MVG2
BioGRIDSKINTL
STRING (EMBL)SKINTL
ZODIACSKINTL
Ontologies - Pathways
QuickGOA8MVG2
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSKINTL
Atlas of Cancer Signalling NetworkSKINTL
Wikipedia pathwaysSKINTL
Orthology - Evolution
OrthoDB391037
Phylogenetic Trees/Animal Genes : TreeFamSKINTL
HOVERGENA8MVG2
HOGENOMA8MVG2
Homologs : HomoloGeneSKINTL
Homology/Alignments : Family Browser (UCSC)SKINTL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSKINTL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SKINTL
dbVarSKINTL
ClinVarSKINTL
1000_GenomesSKINTL 
Exome Variant ServerSKINTL
ExAC (Exome Aggregation Consortium)SKINTL (select the gene name)
Genetic variants : HAPMAP391037
Genomic Variants (DGV)SKINTL [DGVbeta]
DECIPHER (Syndromes)1:48567387-48648100  
CONAN: Copy Number AnalysisSKINTL 
Mutations
ICGC Data PortalSKINTL 
TCGA Data PortalSKINTL 
Broad Tumor PortalSKINTL
OASIS PortalSKINTL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSKINTL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SKINTL
DgiDB (Drug Gene Interaction Database)SKINTL
DoCM (Curated mutations)SKINTL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SKINTL (select a term)
intoGenSKINTL
Cancer3DSKINTL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSKINTL
Genetic Testing Registry SKINTL
NextProtA8MVG2 [Medical]
TSGene391037
GENETestsSKINTL
Huge Navigator SKINTL [HugePedia]
snp3D : Map Gene to Disease391037
BioCentury BCIQSKINTL
ClinGenSKINTL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD391037
Clinical trialSKINTL
Miscellaneous
canSAR (ICR)SKINTL (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSKINTL
EVEXSKINTL
GoPubMedSKINTL
iHOPSKINTL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:14 CET 2017

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