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SKOR1 (SKI family transcriptional corepressor 1)

Identity

Alias_namesLBXCOR1
Lbxcor1 homolog (mouse)
Alias_symbol (synonym)CORL1
FUSSEL15
Other alias
HGNC (Hugo) SKOR1
LocusID (NCBI) 390598
Atlas_Id 52104
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 68112042 and ends at 68126174 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SKOR1   21326
Cards
Entrez_Gene (NCBI)SKOR1  390598  SKI family transcriptional corepressor 1
AliasesCORL1; FUSSEL15; LBXCOR1
GeneCards (Weizmann)SKOR1
Ensembl hg19 (Hinxton)ENSG00000188779 [Gene_View]  chr15:68112042-68126174 [Contig_View]  SKOR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188779 [Gene_View]  chr15:68112042-68126174 [Contig_View]  SKOR1 [Vega]
ICGC DataPortalENSG00000188779
TCGA cBioPortalSKOR1
AceView (NCBI)SKOR1
Genatlas (Paris)SKOR1
WikiGenes390598
SOURCE (Princeton)SKOR1
Genetics Home Reference (NIH)SKOR1
Genomic and cartography
GoldenPath hg19 (UCSC)SKOR1  -     chr15:68112042-68126174 +  15q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SKOR1  -     15q23   [Description]    (hg38-Dec_2013)
EnsemblSKOR1 - 15q23 [CytoView hg19]  SKOR1 - 15q23 [CytoView hg38]
Mapping of homologs : NCBISKOR1 [Mapview hg19]  SKOR1 [Mapview hg38]
OMIM611273   
Gene and transcription
Genbank (Entrez)AY669507 BC168376
RefSeq transcript (Entrez)NM_001031807 NM_001258024
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)SKOR1
Cluster EST : UnigeneHs.451224 [ NCBI ]
CGAP (NCI)Hs.451224
Alternative Splicing GalleryENSG00000188779
Gene ExpressionSKOR1 [ NCBI-GEO ]   SKOR1 [ EBI - ARRAY_EXPRESS ]   SKOR1 [ SEEK ]   SKOR1 [ MEM ]
Gene Expression Viewer (FireBrowse)SKOR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390598
GTEX Portal (Tissue expression)SKOR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP84550   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP84550  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP84550
Splice isoforms : SwissVarP84550
PhosPhoSitePlusP84550
Domains : Interpro (EBI)c-SKI_SMAD4-bd_dom    DNA-bd_dom_put    SAND_dom-like    SKOR1    Transform_Ski    Tscrpt_reg_SKI_SnoN   
Domain families : Pfam (Sanger)c-SKI_SMAD_bind (PF08782)    Ski_Sno (PF02437)   
Domain families : Pfam (NCBI)pfam08782    pfam02437   
Domain families : Smart (EMBL)c-SKI_SMAD_bind (SM01046)  
Conserved Domain (NCBI)SKOR1
DMDM Disease mutations390598
Blocks (Seattle)SKOR1
SuperfamilyP84550
Human Protein AtlasENSG00000188779
Peptide AtlasP84550
IPIIPI00399411   IPI00657761   IPI00783918   IPI01026145   IPI01026483   
Protein Interaction databases
DIP (DOE-UCLA)P84550
IntAct (EBI)P84550
FunCoupENSG00000188779
BioGRIDSKOR1
STRING (EMBL)SKOR1
ZODIACSKOR1
Ontologies - Pathways
QuickGOP84550
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription corepressor activity  nucleus  nucleus  transcription factor complex  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  dendrite  negative regulation of transforming growth factor beta receptor signaling pathway  negative regulation of BMP signaling pathway  neuronal cell body  SMAD binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription corepressor activity  nucleus  nucleus  transcription factor complex  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  dendrite  negative regulation of transforming growth factor beta receptor signaling pathway  negative regulation of BMP signaling pathway  neuronal cell body  SMAD binding  
NDEx NetworkSKOR1
Atlas of Cancer Signalling NetworkSKOR1
Wikipedia pathwaysSKOR1
Orthology - Evolution
OrthoDB390598
GeneTree (enSembl)ENSG00000188779
Phylogenetic Trees/Animal Genes : TreeFamSKOR1
HOVERGENP84550
HOGENOMP84550
Homologs : HomoloGeneSKOR1
Homology/Alignments : Family Browser (UCSC)SKOR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSKOR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SKOR1
dbVarSKOR1
ClinVarSKOR1
1000_GenomesSKOR1 
Exome Variant ServerSKOR1
ExAC (Exome Aggregation Consortium)SKOR1 (select the gene name)
Genetic variants : HAPMAP390598
Genomic Variants (DGV)SKOR1 [DGVbeta]
DECIPHER (Syndromes)15:68112042-68126174  ENSG00000188779
CONAN: Copy Number AnalysisSKOR1 
Mutations
ICGC Data PortalSKOR1 
TCGA Data PortalSKOR1 
Broad Tumor PortalSKOR1
OASIS PortalSKOR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSKOR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSKOR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SKOR1
DgiDB (Drug Gene Interaction Database)SKOR1
DoCM (Curated mutations)SKOR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SKOR1 (select a term)
intoGenSKOR1
Cancer3DSKOR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611273   
Orphanet
MedgenSKOR1
Genetic Testing Registry SKOR1
NextProtP84550 [Medical]
TSGene390598
GENETestsSKOR1
Huge Navigator SKOR1 [HugePedia]
snp3D : Map Gene to Disease390598
BioCentury BCIQSKOR1
ClinGenSKOR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390598
Chemical/Pharm GKB GenePA165479509
Clinical trialSKOR1
Miscellaneous
canSAR (ICR)SKOR1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSKOR1
EVEXSKOR1
GoPubMedSKOR1
iHOPSKOR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:27:25 CET 2017

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