Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SKP1P1 (S-phase kinase associated protein 1 pseudogene 1)

Identity

Alias_namesOCP2
TCEB1L
TCEB1P
transcription elongation factor B (SIII), polypeptide 1-like
transcription elongation factor B (SIII), polypeptide 1 pseudogene
Alias_symbol (synonym)EMC19
Other aliasTCEB1P1
HGNC (Hugo) SKP1P1
LocusID (NCBI) 6922
Atlas_Id 79461
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 134157735 and ends at 134174022 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SKP1P1   33696
Cards
Entrez_Gene (NCBI)SKP1P1  6922  S-phase kinase associated protein 1 pseudogene 1
AliasesEMC19; OCP2; TCEB1L; TCEB1P; 
TCEB1P1
GeneCards (Weizmann)SKP1P1
Ensembl hg19 (Hinxton)ENSG00000231234 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231234 [Gene_View]  ENSG00000231234 [Sequence]  chr5:134157735-134174022 [Contig_View]  SKP1P1 [Vega]
ICGC DataPortalENSG00000231234
TCGA cBioPortalSKP1P1
AceView (NCBI)SKP1P1
Genatlas (Paris)SKP1P1
WikiGenes6922
SOURCE (Princeton)SKP1P1
Genetics Home Reference (NIH)SKP1P1
Genomic and cartography
GoldenPath hg38 (UCSC)SKP1P1  -     chr5:134157735-134174022 -  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SKP1P1  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblSKP1P1 - 5q31.1 [CytoView hg19]  SKP1P1 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBISKP1P1 [Mapview hg19]  SKP1P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)EU447011
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SKP1P1
Alternative Splicing GalleryENSG00000231234
Gene ExpressionSKP1P1 [ NCBI-GEO ]   SKP1P1 [ EBI - ARRAY_EXPRESS ]   SKP1P1 [ SEEK ]   SKP1P1 [ MEM ]
Gene Expression Viewer (FireBrowse)SKP1P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6922
GTEX Portal (Tissue expression)SKP1P1
Human Protein AtlasENSG00000231234-SKP1P1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SKP1P1
DMDM Disease mutations6922
Blocks (Seattle)SKP1P1
Human Protein Atlas [tissue]ENSG00000231234-SKP1P1 [tissue]
Protein Interaction databases
FunCoupENSG00000231234
BioGRIDSKP1P1
STRING (EMBL)SKP1P1
ZODIACSKP1P1
Ontologies - Pathways
Huge Navigator SKP1P1 [HugePedia]
snp3D : Map Gene to Disease6922
BioCentury BCIQSKP1P1
ClinGenSKP1P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6922
Chemical/Pharm GKB GenePA36377
Clinical trialSKP1P1
Miscellaneous
canSAR (ICR)SKP1P1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSKP1P1
EVEXSKP1P1
GoPubMedSKP1P1
iHOPSKP1P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:29:00 CEST 2018

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