Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLAIN1 (SLAIN motif family member 1)

Identity

Alias_namesC13orf32
chromosome 13 open reading frame 32
Alias_symbol (synonym)FLJ30046
Other alias
HGNC (Hugo) SLAIN1
LocusID (NCBI) 122060
Atlas_Id 73264
Location 13q22.3  [Link to chromosome band 13q22]
Location_base_pair Starts at 77698881 and ends at 77764242 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAIM (3q22.3) / SLAIN1 (13q22.3)GDAP2 (1p12) / SLAIN1 (13q22.3)MIA3 (1q41) / SLAIN1 (13q22.3)
NCOA3 (20q13.12) / SLAIN1 (13q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLAIN1   26387
Cards
Entrez_Gene (NCBI)SLAIN1  122060  SLAIN motif family member 1
AliasesC13orf32
GeneCards (Weizmann)SLAIN1
Ensembl hg19 (Hinxton)ENSG00000139737 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139737 [Gene_View]  chr13:77698881-77764242 [Contig_View]  SLAIN1 [Vega]
ICGC DataPortalENSG00000139737
TCGA cBioPortalSLAIN1
AceView (NCBI)SLAIN1
Genatlas (Paris)SLAIN1
WikiGenes122060
SOURCE (Princeton)SLAIN1
Genetics Home Reference (NIH)SLAIN1
Genomic and cartography
GoldenPath hg38 (UCSC)SLAIN1  -     chr13:77698881-77764242 +  13q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLAIN1  -     13q22.3   [Description]    (hg19-Feb_2009)
EnsemblSLAIN1 - 13q22.3 [CytoView hg19]  SLAIN1 - 13q22.3 [CytoView hg38]
Mapping of homologs : NCBISLAIN1 [Mapview hg19]  SLAIN1 [Mapview hg38]
OMIM610491   
Gene and transcription
Genbank (Entrez)AK054608 AK094337 AK289600 AK289714 AK294201
RefSeq transcript (Entrez)NM_001040153 NM_001242868 NM_001242869 NM_001242870 NM_001242871 NM_144595
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLAIN1
Cluster EST : UnigeneHs.732587 [ NCBI ]
CGAP (NCI)Hs.732587
Alternative Splicing GalleryENSG00000139737
Gene ExpressionSLAIN1 [ NCBI-GEO ]   SLAIN1 [ EBI - ARRAY_EXPRESS ]   SLAIN1 [ SEEK ]   SLAIN1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLAIN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)122060
GTEX Portal (Tissue expression)SLAIN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8ND83   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8ND83  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8ND83
Splice isoforms : SwissVarQ8ND83
PhosPhoSitePlusQ8ND83
Domains : Interpro (EBI)Slain   
Domain families : Pfam (Sanger)SLAIN (PF15301)   
Domain families : Pfam (NCBI)pfam15301   
Conserved Domain (NCBI)SLAIN1
DMDM Disease mutations122060
Blocks (Seattle)SLAIN1
SuperfamilyQ8ND83
Human Protein AtlasENSG00000139737
Peptide AtlasQ8ND83
HPRD13400
IPIIPI00784155   IPI00395342   IPI00922588   IPI01018352   IPI00168426   IPI00171518   IPI00643444   IPI00922557   IPI00514093   IPI00645873   IPI00945916   IPI01012114   IPI00945676   IPI00945511   IPI00926945   IPI00946962   
Protein Interaction databases
DIP (DOE-UCLA)Q8ND83
IntAct (EBI)Q8ND83
FunCoupENSG00000139737
BioGRIDSLAIN1
STRING (EMBL)SLAIN1
ZODIACSLAIN1
Ontologies - Pathways
QuickGOQ8ND83
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkSLAIN1
Atlas of Cancer Signalling NetworkSLAIN1
Wikipedia pathwaysSLAIN1
Orthology - Evolution
OrthoDB122060
GeneTree (enSembl)ENSG00000139737
Phylogenetic Trees/Animal Genes : TreeFamSLAIN1
HOVERGENQ8ND83
HOGENOMQ8ND83
Homologs : HomoloGeneSLAIN1
Homology/Alignments : Family Browser (UCSC)SLAIN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLAIN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLAIN1
dbVarSLAIN1
ClinVarSLAIN1
1000_GenomesSLAIN1 
Exome Variant ServerSLAIN1
ExAC (Exome Aggregation Consortium)SLAIN1 (select the gene name)
Genetic variants : HAPMAP122060
Genomic Variants (DGV)SLAIN1 [DGVbeta]
DECIPHERSLAIN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLAIN1 
Mutations
ICGC Data PortalSLAIN1 
TCGA Data PortalSLAIN1 
Broad Tumor PortalSLAIN1
OASIS PortalSLAIN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLAIN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLAIN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLAIN1
DgiDB (Drug Gene Interaction Database)SLAIN1
DoCM (Curated mutations)SLAIN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLAIN1 (select a term)
intoGenSLAIN1
Cancer3DSLAIN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610491   
Orphanet
MedgenSLAIN1
Genetic Testing Registry SLAIN1
NextProtQ8ND83 [Medical]
TSGene122060
GENETestsSLAIN1
Target ValidationSLAIN1
Huge Navigator SLAIN1 [HugePedia]
snp3D : Map Gene to Disease122060
BioCentury BCIQSLAIN1
ClinGenSLAIN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD122060
Chemical/Pharm GKB GenePA162403440
Clinical trialSLAIN1
Miscellaneous
canSAR (ICR)SLAIN1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLAIN1
EVEXSLAIN1
GoPubMedSLAIN1
iHOPSLAIN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:37:51 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.