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SLAIN2 (SLAIN motif family, member 2)

Identity

Alias_namesKIAA1458
KIAA1458
Alias_symbol (synonym)FLJ21611
Other alias
HGNC (Hugo) SLAIN2
LocusID (NCBI) 57606
Atlas_Id 73265
Location 4p11  [Link to chromosome band 4p11]
Location_base_pair Starts at 48343613 and ends at 48428215 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DYNC1H1 (14q32.31) / SLAIN2 (4p11)NDUFA10 (2q37.3) / SLAIN2 (4p11)ZFP36L2 (2p21) / SLAIN2 (4p11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLAIN2   29282
Cards
Entrez_Gene (NCBI)SLAIN2  57606  SLAIN motif family, member 2
AliasesKIAA1458
GeneCards (Weizmann)SLAIN2
Ensembl hg19 (Hinxton)ENSG00000109171 [Gene_View]  chr4:48343613-48428215 [Contig_View]  SLAIN2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000109171 [Gene_View]  chr4:48343613-48428215 [Contig_View]  SLAIN2 [Vega]
ICGC DataPortalENSG00000109171
TCGA cBioPortalSLAIN2
AceView (NCBI)SLAIN2
Genatlas (Paris)SLAIN2
WikiGenes57606
SOURCE (Princeton)SLAIN2
Genetics Home Reference (NIH)SLAIN2
Genomic and cartography
GoldenPath hg19 (UCSC)SLAIN2  -     chr4:48343613-48428215 +  4p11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLAIN2  -     4p11   [Description]    (hg38-Dec_2013)
EnsemblSLAIN2 - 4p11 [CytoView hg19]  SLAIN2 - 4p11 [CytoView hg38]
Mapping of homologs : NCBISLAIN2 [Mapview hg19]  SLAIN2 [Mapview hg38]
OMIM610492   
Gene and transcription
Genbank (Entrez)AB040891 AK025264 AK026476 AK291006 BC006139
RefSeq transcript (Entrez)NM_020846
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)SLAIN2
Cluster EST : UnigeneHs.479677 [ NCBI ]
CGAP (NCI)Hs.479677
Alternative Splicing GalleryENSG00000109171
Gene ExpressionSLAIN2 [ NCBI-GEO ]   SLAIN2 [ EBI - ARRAY_EXPRESS ]   SLAIN2 [ SEEK ]   SLAIN2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLAIN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57606
GTEX Portal (Tissue expression)SLAIN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P270   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P270  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P270
Splice isoforms : SwissVarQ9P270
PhosPhoSitePlusQ9P270
Domains : Interpro (EBI)Slain   
Domain families : Pfam (Sanger)SLAIN (PF15301)   
Domain families : Pfam (NCBI)pfam15301   
Conserved Domain (NCBI)SLAIN2
DMDM Disease mutations57606
Blocks (Seattle)SLAIN2
PDB (SRS)3RDV   
PDB (PDBSum)3RDV   
PDB (IMB)3RDV   
PDB (RSDB)3RDV   
Structural Biology KnowledgeBase3RDV   
SCOP (Structural Classification of Proteins)3RDV   
CATH (Classification of proteins structures)3RDV   
SuperfamilyQ9P270
Human Protein AtlasENSG00000109171
Peptide AtlasQ9P270
IPIIPI00853278   IPI00386228   IPI00967120   IPI00965398   IPI00965637   
Protein Interaction databases
DIP (DOE-UCLA)Q9P270
IntAct (EBI)Q9P270
FunCoupENSG00000109171
BioGRIDSLAIN2
STRING (EMBL)SLAIN2
ZODIACSLAIN2
Ontologies - Pathways
QuickGOQ9P270
Ontology : AmiGOprotein binding  nucleoplasm  nucleolus  cytoplasm  centrosome  microtubule nucleation  microtubule cytoskeleton  positive regulation of microtubule polymerization  cytoplasmic microtubule organization  microtubule plus-end  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleolus  cytoplasm  centrosome  microtubule nucleation  microtubule cytoskeleton  positive regulation of microtubule polymerization  cytoplasmic microtubule organization  microtubule plus-end  
NDEx NetworkSLAIN2
Atlas of Cancer Signalling NetworkSLAIN2
Wikipedia pathwaysSLAIN2
Orthology - Evolution
OrthoDB57606
GeneTree (enSembl)ENSG00000109171
Phylogenetic Trees/Animal Genes : TreeFamSLAIN2
HOVERGENQ9P270
HOGENOMQ9P270
Homologs : HomoloGeneSLAIN2
Homology/Alignments : Family Browser (UCSC)SLAIN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLAIN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLAIN2
dbVarSLAIN2
ClinVarSLAIN2
1000_GenomesSLAIN2 
Exome Variant ServerSLAIN2
ExAC (Exome Aggregation Consortium)SLAIN2 (select the gene name)
Genetic variants : HAPMAP57606
Genomic Variants (DGV)SLAIN2 [DGVbeta]
DECIPHER (Syndromes)4:48343613-48428215  ENSG00000109171
CONAN: Copy Number AnalysisSLAIN2 
Mutations
ICGC Data PortalSLAIN2 
TCGA Data PortalSLAIN2 
Broad Tumor PortalSLAIN2
OASIS PortalSLAIN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLAIN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLAIN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLAIN2
DgiDB (Drug Gene Interaction Database)SLAIN2
DoCM (Curated mutations)SLAIN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLAIN2 (select a term)
intoGenSLAIN2
Cancer3DSLAIN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610492   
Orphanet
MedgenSLAIN2
Genetic Testing Registry SLAIN2
NextProtQ9P270 [Medical]
TSGene57606
GENETestsSLAIN2
Huge Navigator SLAIN2 [HugePedia]
snp3D : Map Gene to Disease57606
BioCentury BCIQSLAIN2
ClinGenSLAIN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57606
Chemical/Pharm GKB GenePA162403457
Clinical trialSLAIN2
Miscellaneous
canSAR (ICR)SLAIN2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLAIN2
EVEXSLAIN2
GoPubMedSLAIN2
iHOPSLAIN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:15 CET 2017

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