Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLAMF6 (SLAM family member 6)

Identity

Alias_symbol (synonym)KALI
NTBA
KALIb
Ly108
SF2000
NTB-A
CD352
Other alias
HGNC (Hugo) SLAMF6
LocusID (NCBI) 114836
Atlas_Id 56305
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 160485030 and ends at 160523262 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SLAMF6   21392
Cards
Entrez_Gene (NCBI)SLAMF6  114836  SLAM family member 6
AliasesCD352; KALI; KALIb; Ly108; 
NTB-A; NTBA; SF2000
GeneCards (Weizmann)SLAMF6
Ensembl hg19 (Hinxton)ENSG00000162739 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162739 [Gene_View]  ENSG00000162739 [Sequence]  chr1:160485030-160523262 [Contig_View]  SLAMF6 [Vega]
ICGC DataPortalENSG00000162739
TCGA cBioPortalSLAMF6
AceView (NCBI)SLAMF6
Genatlas (Paris)SLAMF6
WikiGenes114836
SOURCE (Princeton)SLAMF6
Genetics Home Reference (NIH)SLAMF6
Genomic and cartography
GoldenPath hg38 (UCSC)SLAMF6  -     chr1:160485030-160523262 -  1q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLAMF6  -     1q23.2   [Description]    (hg19-Feb_2009)
EnsemblSLAMF6 - 1q23.2 [CytoView hg19]  SLAMF6 - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBISLAMF6 [Mapview hg19]  SLAMF6 [Mapview hg38]
OMIM606446   
Gene and transcription
Genbank (Entrez)AJ277141 AJ306388 AK125624 AK300013 AK301026
RefSeq transcript (Entrez)NM_001184714 NM_001184715 NM_001184716 NM_052931
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLAMF6
Cluster EST : UnigeneHs.492348 [ NCBI ]
CGAP (NCI)Hs.492348
Alternative Splicing GalleryENSG00000162739
Gene ExpressionSLAMF6 [ NCBI-GEO ]   SLAMF6 [ EBI - ARRAY_EXPRESS ]   SLAMF6 [ SEEK ]   SLAMF6 [ MEM ]
Gene Expression Viewer (FireBrowse)SLAMF6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114836
GTEX Portal (Tissue expression)SLAMF6
Human Protein AtlasENSG00000162739-SLAMF6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DU3
Splice isoforms : SwissVarQ96DU3
PhosPhoSitePlusQ96DU3
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)SLAMF6
DMDM Disease mutations114836
Blocks (Seattle)SLAMF6
PDB (RSDB)2IF7   
PDB Europe2IF7   
PDB (PDBSum)2IF7   
PDB (IMB)2IF7   
Structural Biology KnowledgeBase2IF7   
SCOP (Structural Classification of Proteins)2IF7   
CATH (Classification of proteins structures)2IF7   
SuperfamilyQ96DU3
Human Protein Atlas [tissue]ENSG00000162739-SLAMF6 [tissue]
Peptide AtlasQ96DU3
HPRD05920
IPIIPI00743536   IPI00844554   IPI00978623   IPI00513714   
Protein Interaction databases
DIP (DOE-UCLA)Q96DU3
IntAct (EBI)Q96DU3
FunCoupENSG00000162739
BioGRIDSLAMF6
STRING (EMBL)SLAMF6
ZODIACSLAMF6
Ontologies - Pathways
QuickGOQ96DU3
Ontology : AmiGOprotein binding  plasma membrane  plasma membrane  integral component of membrane  positive regulation of interferon-gamma production  positive regulation of interleukin-17 production  innate immune response  positive regulation of natural killer cell mediated cytotoxicity  regulation of immune response  extracellular exosome  T-helper 17 cell lineage commitment  
Ontology : EGO-EBIprotein binding  plasma membrane  plasma membrane  integral component of membrane  positive regulation of interferon-gamma production  positive regulation of interleukin-17 production  innate immune response  positive regulation of natural killer cell mediated cytotoxicity  regulation of immune response  extracellular exosome  T-helper 17 cell lineage commitment  
NDEx NetworkSLAMF6
Atlas of Cancer Signalling NetworkSLAMF6
Wikipedia pathwaysSLAMF6
Orthology - Evolution
OrthoDB114836
GeneTree (enSembl)ENSG00000162739
Phylogenetic Trees/Animal Genes : TreeFamSLAMF6
HOGENOMQ96DU3
Homologs : HomoloGeneSLAMF6
Homology/Alignments : Family Browser (UCSC)SLAMF6
Gene fusions - Rearrangements
Fusion : QuiverSLAMF6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLAMF6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLAMF6
dbVarSLAMF6
ClinVarSLAMF6
1000_GenomesSLAMF6 
Exome Variant ServerSLAMF6
ExAC (Exome Aggregation Consortium)ENSG00000162739
GNOMAD BrowserENSG00000162739
Varsome BrowserSLAMF6
Genetic variants : HAPMAP114836
Genomic Variants (DGV)SLAMF6 [DGVbeta]
DECIPHERSLAMF6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLAMF6 
Mutations
ICGC Data PortalSLAMF6 
TCGA Data PortalSLAMF6 
Broad Tumor PortalSLAMF6
OASIS PortalSLAMF6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLAMF6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLAMF6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLAMF6
DgiDB (Drug Gene Interaction Database)SLAMF6
DoCM (Curated mutations)SLAMF6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLAMF6 (select a term)
intoGenSLAMF6
Cancer3DSLAMF6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606446   
Orphanet
DisGeNETSLAMF6
MedgenSLAMF6
Genetic Testing Registry SLAMF6
NextProtQ96DU3 [Medical]
TSGene114836
GENETestsSLAMF6
Target ValidationSLAMF6
Huge Navigator SLAMF6 [HugePedia]
snp3D : Map Gene to Disease114836
BioCentury BCIQSLAMF6
ClinGenSLAMF6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114836
Chemical/Pharm GKB GenePA134959277
Clinical trialSLAMF6
Miscellaneous
canSAR (ICR)SLAMF6 (select the gene name)
DataMed IndexSLAMF6
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLAMF6
EVEXSLAMF6
GoPubMedSLAMF6
iHOPSLAMF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Feb 14 16:57:16 CET 2019
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