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SLAMF7 (SLAM family member 7)

Identity

Alias_symbol (synonym)CRACC
19A
CS1
CD319
Other alias
HGNC (Hugo) SLAMF7
LocusID (NCBI) 57823
Atlas_Id 55902
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 160739057 and ends at 160754818 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLAMF7 (1q23.3) / CCSAP (1q42.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLAMF7   21394
Cards
Entrez_Gene (NCBI)SLAMF7  57823  SLAM family member 7
Aliases19A; CD319; CRACC; CS1
GeneCards (Weizmann)SLAMF7
Ensembl hg19 (Hinxton)ENSG00000026751 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000026751 [Gene_View]  ENSG00000026751 [Sequence]  chr1:160739057-160754818 [Contig_View]  SLAMF7 [Vega]
ICGC DataPortalENSG00000026751
TCGA cBioPortalSLAMF7
AceView (NCBI)SLAMF7
Genatlas (Paris)SLAMF7
WikiGenes57823
SOURCE (Princeton)SLAMF7
Genetics Home Reference (NIH)SLAMF7
Genomic and cartography
GoldenPath hg38 (UCSC)SLAMF7  -     chr1:160739057-160754818 +  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLAMF7  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblSLAMF7 - 1q23.3 [CytoView hg19]  SLAMF7 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBISLAMF7 [Mapview hg19]  SLAMF7 [Mapview hg38]
OMIM606625   
Gene and transcription
Genbank (Entrez)AB027233 AF291815 AF390894 AJ271869 AJ276429
RefSeq transcript (Entrez)NM_001282588 NM_001282589 NM_001282590 NM_001282591 NM_001282592 NM_001282593 NM_001282594 NM_001282595 NM_001282596 NM_021181
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLAMF7
Cluster EST : UnigeneHs.517265 [ NCBI ]
CGAP (NCI)Hs.517265
Alternative Splicing GalleryENSG00000026751
Gene ExpressionSLAMF7 [ NCBI-GEO ]   SLAMF7 [ EBI - ARRAY_EXPRESS ]   SLAMF7 [ SEEK ]   SLAMF7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLAMF7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57823
GTEX Portal (Tissue expression)SLAMF7
Human Protein AtlasENSG00000026751-SLAMF7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ25
Splice isoforms : SwissVarQ9NQ25
PhosPhoSitePlusQ9NQ25
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLAMF7
DMDM Disease mutations57823
Blocks (Seattle)SLAMF7
SuperfamilyQ9NQ25
Human Protein Atlas [tissue]ENSG00000026751-SLAMF7 [tissue]
Peptide AtlasQ9NQ25
HPRD09432
IPIIPI00099863   IPI00167137   IPI00909079   IPI00909933   IPI00909315   IPI00168447   IPI00909028   IPI00876932   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ25
IntAct (EBI)Q9NQ25
FunCoupENSG00000026751
BioGRIDSLAMF7
STRING (EMBL)SLAMF7
ZODIACSLAMF7
Ontologies - Pathways
QuickGOQ9NQ25
Ontology : AmiGOadaptive immune response  plasma membrane  cell adhesion  integral component of membrane  natural killer cell activation  natural killer cell mediated cytotoxicity  identical protein binding  regulation of immune response  
Ontology : EGO-EBIadaptive immune response  plasma membrane  cell adhesion  integral component of membrane  natural killer cell activation  natural killer cell mediated cytotoxicity  identical protein binding  regulation of immune response  
NDEx NetworkSLAMF7
Atlas of Cancer Signalling NetworkSLAMF7
Wikipedia pathwaysSLAMF7
Orthology - Evolution
OrthoDB57823
GeneTree (enSembl)ENSG00000026751
Phylogenetic Trees/Animal Genes : TreeFamSLAMF7
HOVERGENQ9NQ25
HOGENOMQ9NQ25
Homologs : HomoloGeneSLAMF7
Homology/Alignments : Family Browser (UCSC)SLAMF7
Gene fusions - Rearrangements
Fusion : QuiverSLAMF7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLAMF7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLAMF7
dbVarSLAMF7
ClinVarSLAMF7
1000_GenomesSLAMF7 
Exome Variant ServerSLAMF7
ExAC (Exome Aggregation Consortium)ENSG00000026751
GNOMAD BrowserENSG00000026751
Varsome BrowserSLAMF7
Genetic variants : HAPMAP57823
Genomic Variants (DGV)SLAMF7 [DGVbeta]
DECIPHERSLAMF7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLAMF7 
Mutations
ICGC Data PortalSLAMF7 
TCGA Data PortalSLAMF7 
Broad Tumor PortalSLAMF7
OASIS PortalSLAMF7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLAMF7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLAMF7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLAMF7
DgiDB (Drug Gene Interaction Database)SLAMF7
DoCM (Curated mutations)SLAMF7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLAMF7 (select a term)
intoGenSLAMF7
Cancer3DSLAMF7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606625   
Orphanet
DisGeNETSLAMF7
MedgenSLAMF7
Genetic Testing Registry SLAMF7
NextProtQ9NQ25 [Medical]
TSGene57823
GENETestsSLAMF7
Target ValidationSLAMF7
Huge Navigator SLAMF7 [HugePedia]
snp3D : Map Gene to Disease57823
BioCentury BCIQSLAMF7
ClinGenSLAMF7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57823
Chemical/Pharm GKB GenePA134977110
Clinical trialSLAMF7
Miscellaneous
canSAR (ICR)SLAMF7 (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLAMF7
EVEXSLAMF7
GoPubMedSLAMF7
iHOPSLAMF7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:52:28 CEST 2018

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