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SLAMF8 (SLAM family member 8)

Identity

Alias_symbol (synonym)BLAME
SBBI42
CD353
Other alias
HGNC (Hugo) SLAMF8
LocusID (NCBI) 56833
Atlas_Id 73268
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 159826689 and ends at 159837492 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLAMF8   21391
Cards
Entrez_Gene (NCBI)SLAMF8  56833  SLAM family member 8
AliasesBLAME; CD353; SBBI42
GeneCards (Weizmann)SLAMF8
Ensembl hg19 (Hinxton)ENSG00000158714 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158714 [Gene_View]  chr1:159826689-159837492 [Contig_View]  SLAMF8 [Vega]
ICGC DataPortalENSG00000158714
TCGA cBioPortalSLAMF8
AceView (NCBI)SLAMF8
Genatlas (Paris)SLAMF8
WikiGenes56833
SOURCE (Princeton)SLAMF8
Genetics Home Reference (NIH)SLAMF8
Genomic and cartography
GoldenPath hg38 (UCSC)SLAMF8  -     chr1:159826689-159837492 +  1q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLAMF8  -     1q23.2   [Description]    (hg19-Feb_2009)
EnsemblSLAMF8 - 1q23.2 [CytoView hg19]  SLAMF8 - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBISLAMF8 [Mapview hg19]  SLAMF8 [Mapview hg38]
OMIM606620   
Gene and transcription
Genbank (Entrez)AF144235 AF146761 AK074669 BC109194 DA578369
RefSeq transcript (Entrez)NM_001330741 NM_020125
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLAMF8
Cluster EST : UnigeneHs.438683 [ NCBI ]
CGAP (NCI)Hs.438683
Alternative Splicing GalleryENSG00000158714
Gene ExpressionSLAMF8 [ NCBI-GEO ]   SLAMF8 [ EBI - ARRAY_EXPRESS ]   SLAMF8 [ SEEK ]   SLAMF8 [ MEM ]
Gene Expression Viewer (FireBrowse)SLAMF8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56833
GTEX Portal (Tissue expression)SLAMF8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0V8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0V8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0V8
Splice isoforms : SwissVarQ9P0V8
PhosPhoSitePlusQ9P0V8
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLAMF8
DMDM Disease mutations56833
Blocks (Seattle)SLAMF8
SuperfamilyQ9P0V8
Human Protein AtlasENSG00000158714
Peptide AtlasQ9P0V8
HPRD09429
IPIIPI00024495   IPI00479204   IPI00383657   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0V8
IntAct (EBI)Q9P0V8
FunCoupENSG00000158714
BioGRIDSLAMF8
STRING (EMBL)SLAMF8
ZODIACSLAMF8
Ontologies - Pathways
QuickGOQ9P0V8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkSLAMF8
Atlas of Cancer Signalling NetworkSLAMF8
Wikipedia pathwaysSLAMF8
Orthology - Evolution
OrthoDB56833
GeneTree (enSembl)ENSG00000158714
Phylogenetic Trees/Animal Genes : TreeFamSLAMF8
HOVERGENQ9P0V8
HOGENOMQ9P0V8
Homologs : HomoloGeneSLAMF8
Homology/Alignments : Family Browser (UCSC)SLAMF8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLAMF8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLAMF8
dbVarSLAMF8
ClinVarSLAMF8
1000_GenomesSLAMF8 
Exome Variant ServerSLAMF8
ExAC (Exome Aggregation Consortium)SLAMF8 (select the gene name)
Genetic variants : HAPMAP56833
Genomic Variants (DGV)SLAMF8 [DGVbeta]
DECIPHERSLAMF8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLAMF8 
Mutations
ICGC Data PortalSLAMF8 
TCGA Data PortalSLAMF8 
Broad Tumor PortalSLAMF8
OASIS PortalSLAMF8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLAMF8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLAMF8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLAMF8
DgiDB (Drug Gene Interaction Database)SLAMF8
DoCM (Curated mutations)SLAMF8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLAMF8 (select a term)
intoGenSLAMF8
Cancer3DSLAMF8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606620   
Orphanet
MedgenSLAMF8
Genetic Testing Registry SLAMF8
NextProtQ9P0V8 [Medical]
TSGene56833
GENETestsSLAMF8
Target ValidationSLAMF8
Huge Navigator SLAMF8 [HugePedia]
snp3D : Map Gene to Disease56833
BioCentury BCIQSLAMF8
ClinGenSLAMF8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56833
Chemical/Pharm GKB GenePA134983606
Clinical trialSLAMF8
Miscellaneous
canSAR (ICR)SLAMF8 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLAMF8
EVEXSLAMF8
GoPubMedSLAMF8
iHOPSLAMF8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:48 CEST 2017

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