Atlas of Genetics and Cytogenetics in Oncology and Haematology

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SLAMF9 (SLAM family member 9)

Identity

Alias (NCBI)CD2F-10
CD2F10
CD84-H1
CD84H1
SF2001
HGNC (Hugo) SLAMF9
HGNC Alias symbCD2F-10
CD84-H1
SF2001
LocusID (NCBI) 89886
Atlas_Id 73269
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 159951492 and ends at 159954254 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IGSF9 (1q23.2) / SLAMF9 (1q23.2)SLAMF9 (1q23.2) / ALG12 (22q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  IGSF9/SLAMF9 (1q23)

External links

Nomenclature
HGNC (Hugo)SLAMF9   18430
Cards
Entrez_Gene (NCBI)SLAMF9  89886  SLAM family member 9
AliasesCD2F-10; CD2F10; CD84-H1; CD84H1; 
SF2001
GeneCards (Weizmann)SLAMF9
Ensembl hg19 (Hinxton)ENSG00000162723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162723 [Gene_View]  ENSG00000162723 [Sequence]  chr1:159951492-159954254 [Contig_View]  SLAMF9 [Vega]
ICGC DataPortalENSG00000162723
TCGA cBioPortalSLAMF9
AceView (NCBI)SLAMF9
Genatlas (Paris)SLAMF9
WikiGenes89886
SOURCE (Princeton)SLAMF9
Genetics Home Reference (NIH)SLAMF9
Genomic and cartography
GoldenPath hg38 (UCSC)SLAMF9  -     chr1:159951492-159954254 -  1q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLAMF9  -     1q23.2   [Description]    (hg19-Feb_2009)
GoldenPathSLAMF9 - 1q23.2 [CytoView hg19]  SLAMF9 - 1q23.2 [CytoView hg38]
ImmunoBaseENSG00000162723
genome Data Viewer NCBISLAMF9 [Mapview hg19]  
OMIM608589   
Gene and transcription
Genbank (Entrez)AF275725 AY034613 AY358801 BC070213 BC074754
RefSeq transcript (Entrez)NM_001146172 NM_001146173 NM_033438
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLAMF9
Alternative Splicing GalleryENSG00000162723
Gene ExpressionSLAMF9 [ NCBI-GEO ]   SLAMF9 [ EBI - ARRAY_EXPRESS ]   SLAMF9 [ SEEK ]   SLAMF9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLAMF9 [ Firebrowse - Broad ]
GenevisibleExpression of SLAMF9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89886
GTEX Portal (Tissue expression)SLAMF9
Human Protein AtlasENSG00000162723-SLAMF9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A28   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A28  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A28
Splice isoforms : SwissVarQ96A28
PhosPhoSitePlusQ96A28
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLAMF9
DMDM Disease mutations89886
Blocks (Seattle)SLAMF9
SuperfamilyQ96A28
Human Protein Atlas [tissue]ENSG00000162723-SLAMF9 [tissue]
Peptide AtlasQ96A28
HPRD12263
IPIIPI00059190   IPI00647800   IPI00929126   
Protein Interaction databases
DIP (DOE-UCLA)Q96A28
IntAct (EBI)Q96A28
FunCoupENSG00000162723
BioGRIDSLAMF9
STRING (EMBL)SLAMF9
ZODIACSLAMF9
Ontologies - Pathways
QuickGOQ96A28
Ontology : AmiGOmolecular_function  biological_process  integral component of membrane  
Ontology : EGO-EBImolecular_function  biological_process  integral component of membrane  
NDEx NetworkSLAMF9
Atlas of Cancer Signalling NetworkSLAMF9
Wikipedia pathwaysSLAMF9
Orthology - Evolution
OrthoDB89886
GeneTree (enSembl)ENSG00000162723
Phylogenetic Trees/Animal Genes : TreeFamSLAMF9
HOGENOMQ96A28
Homologs : HomoloGeneSLAMF9
Homology/Alignments : Family Browser (UCSC)SLAMF9
Gene fusions - Rearrangements
Fusion : QuiverSLAMF9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLAMF9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLAMF9
dbVarSLAMF9
ClinVarSLAMF9
1000_GenomesSLAMF9 
Exome Variant ServerSLAMF9
GNOMAD BrowserENSG00000162723
Varsome BrowserSLAMF9
Genetic variants : HAPMAP89886
Genomic Variants (DGV)SLAMF9 [DGVbeta]
DECIPHERSLAMF9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLAMF9 
Mutations
ICGC Data PortalSLAMF9 
TCGA Data PortalSLAMF9 
Broad Tumor PortalSLAMF9
OASIS PortalSLAMF9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLAMF9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLAMF9
Mutations and Diseases : HGMDSLAMF9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLAMF9
DgiDB (Drug Gene Interaction Database)SLAMF9
DoCM (Curated mutations)SLAMF9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLAMF9 (select a term)
intoGenSLAMF9
Cancer3DSLAMF9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608589   
Orphanet
DisGeNETSLAMF9
MedgenSLAMF9
Genetic Testing Registry SLAMF9
NextProtQ96A28 [Medical]
TSGene89886
GENETestsSLAMF9
Target ValidationSLAMF9
Huge Navigator SLAMF9 [HugePedia]
snp3D : Map Gene to Disease89886
BioCentury BCIQSLAMF9
ClinGenSLAMF9
Clinical trials, drugs, therapy
Protein Interactions : CTD89886
Pharm GKB GenePA134993219
Clinical trialSLAMF9
Miscellaneous
canSAR (ICR)SLAMF9 (select the gene name)
HarmonizomeSLAMF9
DataMed IndexSLAMF9
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLAMF9
EVEXSLAMF9
GoPubMedSLAMF9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:27:45 CEST 2020
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