Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLBP (stem-loop binding protein)

Identity

Alias_namesstem-loop (histone) binding protein
Alias_symbol (synonym)HBP
Other alias
HGNC (Hugo) SLBP
LocusID (NCBI) 7884
Atlas_Id 54997
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 1694458 and ends at 1714468 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
APOB (2p24.1) / SLBP (4p16.3)SLBP (4p16.3) / LETM1 (4p16.3)SLBP (4p16.3) / SLBP (4p16.3)
SLBP 4p16.3 / LETM1 4p16.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLBP   10904
Cards
Entrez_Gene (NCBI)SLBP  7884  stem-loop binding protein
AliasesHBP
GeneCards (Weizmann)SLBP
Ensembl hg19 (Hinxton)ENSG00000163950 [Gene_View]  chr4:1694458-1714468 [Contig_View]  SLBP [Vega]
Ensembl hg38 (Hinxton)ENSG00000163950 [Gene_View]  chr4:1694458-1714468 [Contig_View]  SLBP [Vega]
ICGC DataPortalENSG00000163950
TCGA cBioPortalSLBP
AceView (NCBI)SLBP
Genatlas (Paris)SLBP
WikiGenes7884
SOURCE (Princeton)SLBP
Genetics Home Reference (NIH)SLBP
Genomic and cartography
GoldenPath hg19 (UCSC)SLBP  -     chr4:1694458-1714468 -  4p16.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLBP  -     4p16.3   [Description]    (hg38-Dec_2013)
EnsemblSLBP - 4p16.3 [CytoView hg19]  SLBP - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBISLBP [Mapview hg19]  SLBP [Mapview hg38]
OMIM602422   
Gene and transcription
Genbank (Entrez)AK091735 AK093314 AK094257 AK300826 AK315635
RefSeq transcript (Entrez)NM_001306074 NM_001306075 NM_006527
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006051 NW_004929314
Consensus coding sequences : CCDS (NCBI)SLBP
Cluster EST : UnigeneHs.298345 [ NCBI ]
CGAP (NCI)Hs.298345
Alternative Splicing GalleryENSG00000163950
Gene ExpressionSLBP [ NCBI-GEO ]   SLBP [ EBI - ARRAY_EXPRESS ]   SLBP [ SEEK ]   SLBP [ MEM ]
Gene Expression Viewer (FireBrowse)SLBP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7884
GTEX Portal (Tissue expression)SLBP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14493   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14493  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14493
Splice isoforms : SwissVarQ14493
PhosPhoSitePlusQ14493
Domains : Interpro (EBI)SLBP1/SLBP2    SLBP_RNA_bind   
Domain families : Pfam (Sanger)SLBP_RNA_bind (PF15247)   
Domain families : Pfam (NCBI)pfam15247   
Conserved Domain (NCBI)SLBP
DMDM Disease mutations7884
Blocks (Seattle)SLBP
PDB (SRS)2KJM    4L8R    4QOZ   
PDB (PDBSum)2KJM    4L8R    4QOZ   
PDB (IMB)2KJM    4L8R    4QOZ   
PDB (RSDB)2KJM    4L8R    4QOZ   
Structural Biology KnowledgeBase2KJM    4L8R    4QOZ   
SCOP (Structural Classification of Proteins)2KJM    4L8R    4QOZ   
CATH (Classification of proteins structures)2KJM    4L8R    4QOZ   
SuperfamilyQ14493
Human Protein AtlasENSG00000163950
Peptide AtlasQ14493
HPRD03884
IPIIPI00031015   IPI00947182   IPI00908740   IPI00947027   IPI00946311   IPI00946498   IPI00966673   
Protein Interaction databases
DIP (DOE-UCLA)Q14493
IntAct (EBI)Q14493
FunCoupENSG00000163950
BioGRIDSLBP
STRING (EMBL)SLBP
ZODIACSLBP
Ontologies - Pathways
QuickGOQ14493
Ontology : AmiGOmRNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  termination of RNA polymerase II transcription  mRNA 3'-end processing by stem-loop binding and cleavage  mRNA export from nucleus  histone mRNA metabolic process  intracellular ribonucleoprotein complex  nuclear DNA replication  poly(A) RNA binding  mRNA transport  histone pre-mRNA 3'end processing complex  histone pre-mRNA stem-loop binding  histone pre-mRNA DCP binding  
Ontology : EGO-EBImRNA binding  protein binding  nucleus  nucleoplasm  cytoplasm  cytosol  termination of RNA polymerase II transcription  mRNA 3'-end processing by stem-loop binding and cleavage  mRNA export from nucleus  histone mRNA metabolic process  intracellular ribonucleoprotein complex  nuclear DNA replication  poly(A) RNA binding  mRNA transport  histone pre-mRNA 3'end processing complex  histone pre-mRNA stem-loop binding  histone pre-mRNA DCP binding  
NDEx NetworkSLBP
Atlas of Cancer Signalling NetworkSLBP
Wikipedia pathwaysSLBP
Orthology - Evolution
OrthoDB7884
GeneTree (enSembl)ENSG00000163950
Phylogenetic Trees/Animal Genes : TreeFamSLBP
HOVERGENQ14493
HOGENOMQ14493
Homologs : HomoloGeneSLBP
Homology/Alignments : Family Browser (UCSC)SLBP
Gene fusions - Rearrangements
Fusion : MitelmanSLBP/LETM1 [4p16.3/4p16.3]  
Fusion: TCGASLBP 4p16.3 LETM1 4p16.3 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLBP
dbVarSLBP
ClinVarSLBP
1000_GenomesSLBP 
Exome Variant ServerSLBP
ExAC (Exome Aggregation Consortium)SLBP (select the gene name)
Genetic variants : HAPMAP7884
Genomic Variants (DGV)SLBP [DGVbeta]
DECIPHER (Syndromes)4:1694458-1714468  ENSG00000163950
CONAN: Copy Number AnalysisSLBP 
Mutations
ICGC Data PortalSLBP 
TCGA Data PortalSLBP 
Broad Tumor PortalSLBP
OASIS PortalSLBP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLBP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLBP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLBP
DgiDB (Drug Gene Interaction Database)SLBP
DoCM (Curated mutations)SLBP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLBP (select a term)
intoGenSLBP
Cancer3DSLBP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602422   
Orphanet
MedgenSLBP
Genetic Testing Registry SLBP
NextProtQ14493 [Medical]
TSGene7884
GENETestsSLBP
Huge Navigator SLBP [HugePedia]
snp3D : Map Gene to Disease7884
BioCentury BCIQSLBP
ClinGenSLBP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7884
Chemical/Pharm GKB GenePA35804
Clinical trialSLBP
Miscellaneous
canSAR (ICR)SLBP (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLBP
EVEXSLBP
GoPubMedSLBP
iHOPSLBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:19:27 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.