Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC10A2 (solute carrier family 10 member 2)

Identity

Alias_namesASBT
ISBT
solute carrier family 10 (sodium/bile acid cotransporter)
Other aliasIBAT
NTCP2
PBAM
HGNC (Hugo) SLC10A2
LocusID (NCBI) 6555
Atlas_Id 43699
Location 13q33.1  [Link to chromosome band 13q33]
Location_base_pair Starts at 103696348 and ends at 103719196 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC10A2   10906
Cards
Entrez_Gene (NCBI)SLC10A2  6555  solute carrier family 10 member 2
AliasesASBT; IBAT; ISBT; NTCP2; 
PBAM
GeneCards (Weizmann)SLC10A2
Ensembl hg19 (Hinxton)ENSG00000125255 [Gene_View]  chr13:103696348-103719196 [Contig_View]  SLC10A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000125255 [Gene_View]  chr13:103696348-103719196 [Contig_View]  SLC10A2 [Vega]
ICGC DataPortalENSG00000125255
TCGA cBioPortalSLC10A2
AceView (NCBI)SLC10A2
Genatlas (Paris)SLC10A2
WikiGenes6555
SOURCE (Princeton)SLC10A2
Genetics Home Reference (NIH)SLC10A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC10A2  -     chr13:103696348-103719196 -  13q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC10A2  -     13q33.1   [Description]    (hg38-Dec_2013)
EnsemblSLC10A2 - 13q33.1 [CytoView hg19]  SLC10A2 - 13q33.1 [CytoView hg38]
Mapping of homologs : NCBISLC10A2 [Mapview hg19]  SLC10A2 [Mapview hg38]
OMIM601295   613291   
Gene and transcription
Genbank (Entrez)BC130521 BC130523 HQ258177 U10417
RefSeq transcript (Entrez)NM_000452
RefSeq genomic (Entrez)NC_000013 NC_018924 NG_016648 NT_009952 NW_004929389
Consensus coding sequences : CCDS (NCBI)SLC10A2
Cluster EST : UnigeneHs.194783 [ NCBI ]
CGAP (NCI)Hs.194783
Alternative Splicing GalleryENSG00000125255
Gene ExpressionSLC10A2 [ NCBI-GEO ]   SLC10A2 [ EBI - ARRAY_EXPRESS ]   SLC10A2 [ SEEK ]   SLC10A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC10A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6555
GTEX Portal (Tissue expression)SLC10A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12908   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12908  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12908
Splice isoforms : SwissVarQ12908
PhosPhoSitePlusQ12908
Domains : Interpro (EBI)BilAc:Na_symport/Acr3    Bilac:Na_transpt    SLC10A2   
Domain families : Pfam (Sanger)SBF (PF01758)   
Domain families : Pfam (NCBI)pfam01758   
Conserved Domain (NCBI)SLC10A2
DMDM Disease mutations6555
Blocks (Seattle)SLC10A2
SuperfamilyQ12908
Human Protein AtlasENSG00000125255
Peptide AtlasQ12908
HPRD03189
IPIIPI00030208   
Protein Interaction databases
DIP (DOE-UCLA)Q12908
IntAct (EBI)Q12908
FunCoupENSG00000125255
BioGRIDSLC10A2
STRING (EMBL)SLC10A2
ZODIACSLC10A2
Ontologies - Pathways
QuickGOQ12908
Ontology : AmiGOplasma membrane  integral component of plasma membrane  microvillus  transport  sodium ion transport  bile acid:sodium symporter activity  bile acid and bile salt transport  apical plasma membrane  transmembrane transport  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  microvillus  transport  sodium ion transport  bile acid:sodium symporter activity  bile acid and bile salt transport  apical plasma membrane  transmembrane transport  
Pathways : KEGGBile secretion   
NDEx NetworkSLC10A2
Atlas of Cancer Signalling NetworkSLC10A2
Wikipedia pathwaysSLC10A2
Orthology - Evolution
OrthoDB6555
GeneTree (enSembl)ENSG00000125255
Phylogenetic Trees/Animal Genes : TreeFamSLC10A2
HOVERGENQ12908
HOGENOMQ12908
Homologs : HomoloGeneSLC10A2
Homology/Alignments : Family Browser (UCSC)SLC10A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC10A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC10A2
dbVarSLC10A2
ClinVarSLC10A2
1000_GenomesSLC10A2 
Exome Variant ServerSLC10A2
ExAC (Exome Aggregation Consortium)SLC10A2 (select the gene name)
Genetic variants : HAPMAP6555
Genomic Variants (DGV)SLC10A2 [DGVbeta]
DECIPHER (Syndromes)13:103696348-103719196  ENSG00000125255
CONAN: Copy Number AnalysisSLC10A2 
Mutations
ICGC Data PortalSLC10A2 
TCGA Data PortalSLC10A2 
Broad Tumor PortalSLC10A2
OASIS PortalSLC10A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC10A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC10A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC10A2
DgiDB (Drug Gene Interaction Database)SLC10A2
DoCM (Curated mutations)SLC10A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC10A2 (select a term)
intoGenSLC10A2
Cancer3DSLC10A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601295    613291   
Orphanet
MedgenSLC10A2
Genetic Testing Registry SLC10A2
NextProtQ12908 [Medical]
TSGene6555
GENETestsSLC10A2
Huge Navigator SLC10A2 [HugePedia]
snp3D : Map Gene to Disease6555
BioCentury BCIQSLC10A2
ClinGenSLC10A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6555
Chemical/Pharm GKB GenePA318
Clinical trialSLC10A2
Miscellaneous
canSAR (ICR)SLC10A2 (select the gene name)
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC10A2
EVEXSLC10A2
GoPubMedSLC10A2
iHOPSLC10A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:27:28 CET 2017

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