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SLC10A3 (solute carrier family 10, member 3)

Identity

Alias_namessolute carrier family 10, member 3
Alias_symbol (synonym)P3
DXS253E
Other alias
HGNC (Hugo) SLC10A3
LocusID (NCBI) 8273
Atlas_Id 73271
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153715645 and ends at 153719029 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATP2B3 (Xq28) / SLC10A3 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC10A3   22979
Cards
Entrez_Gene (NCBI)SLC10A3  8273  solute carrier family 10, member 3
AliasesDXS253E; P3
GeneCards (Weizmann)SLC10A3
Ensembl hg19 (Hinxton)ENSG00000126903 [Gene_View]  chrX:153715645-153719029 [Contig_View]  SLC10A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000126903 [Gene_View]  chrX:153715645-153719029 [Contig_View]  SLC10A3 [Vega]
ICGC DataPortalENSG00000126903
TCGA cBioPortalSLC10A3
AceView (NCBI)SLC10A3
Genatlas (Paris)SLC10A3
WikiGenes8273
SOURCE (Princeton)SLC10A3
Genetics Home Reference (NIH)SLC10A3
Genomic and cartography
GoldenPath hg19 (UCSC)SLC10A3  -     chrX:153715645-153719029 -  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC10A3  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblSLC10A3 - Xq28 [CytoView hg19]  SLC10A3 - Xq28 [CytoView hg38]
Mapping of homologs : NCBISLC10A3 [Mapview hg19]  SLC10A3 [Mapview hg38]
OMIM312090   
Gene and transcription
Genbank (Entrez)AM393145 AM393654 BC004966 BG327309 BM981524
RefSeq transcript (Entrez)NM_001142391 NM_001142392 NM_019848
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_013261 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)SLC10A3
Cluster EST : UnigeneHs.522826 [ NCBI ]
CGAP (NCI)Hs.522826
Alternative Splicing GalleryENSG00000126903
Gene ExpressionSLC10A3 [ NCBI-GEO ]   SLC10A3 [ EBI - ARRAY_EXPRESS ]   SLC10A3 [ SEEK ]   SLC10A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC10A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8273
GTEX Portal (Tissue expression)SLC10A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09131   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09131  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09131
Splice isoforms : SwissVarP09131
PhosPhoSitePlusP09131
Domains : Interpro (EBI)BilAc:Na_symport/Acr3    Bilac:Na_transpt    SLC10A3   
Domain families : Pfam (Sanger)SBF (PF01758)   
Domain families : Pfam (NCBI)pfam01758   
Conserved Domain (NCBI)SLC10A3
DMDM Disease mutations8273
Blocks (Seattle)SLC10A3
SuperfamilyP09131
Human Protein AtlasENSG00000126903
Peptide AtlasP09131
HPRD02418
IPIIPI00012852   IPI00844228   IPI00646519   IPI00894532   
Protein Interaction databases
DIP (DOE-UCLA)P09131
IntAct (EBI)P09131
FunCoupENSG00000126903
BioGRIDSLC10A3
STRING (EMBL)SLC10A3
ZODIACSLC10A3
Ontologies - Pathways
QuickGOP09131
Ontology : AmiGOintegral component of plasma membrane  bile acid:sodium symporter activity  bile acid and bile salt transport  response to retinoic acid  transmembrane transport  
Ontology : EGO-EBIintegral component of plasma membrane  bile acid:sodium symporter activity  bile acid and bile salt transport  response to retinoic acid  transmembrane transport  
NDEx NetworkSLC10A3
Atlas of Cancer Signalling NetworkSLC10A3
Wikipedia pathwaysSLC10A3
Orthology - Evolution
OrthoDB8273
GeneTree (enSembl)ENSG00000126903
Phylogenetic Trees/Animal Genes : TreeFamSLC10A3
HOVERGENP09131
HOGENOMP09131
Homologs : HomoloGeneSLC10A3
Homology/Alignments : Family Browser (UCSC)SLC10A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC10A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC10A3
dbVarSLC10A3
ClinVarSLC10A3
1000_GenomesSLC10A3 
Exome Variant ServerSLC10A3
ExAC (Exome Aggregation Consortium)SLC10A3 (select the gene name)
Genetic variants : HAPMAP8273
Genomic Variants (DGV)SLC10A3 [DGVbeta]
DECIPHER (Syndromes)X:153715645-153719029  ENSG00000126903
CONAN: Copy Number AnalysisSLC10A3 
Mutations
ICGC Data PortalSLC10A3 
TCGA Data PortalSLC10A3 
Broad Tumor PortalSLC10A3
OASIS PortalSLC10A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC10A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC10A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch SLC10A3
DgiDB (Drug Gene Interaction Database)SLC10A3
DoCM (Curated mutations)SLC10A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC10A3 (select a term)
intoGenSLC10A3
Cancer3DSLC10A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM312090   
Orphanet
MedgenSLC10A3
Genetic Testing Registry SLC10A3
NextProtP09131 [Medical]
TSGene8273
GENETestsSLC10A3
Huge Navigator SLC10A3 [HugePedia]
snp3D : Map Gene to Disease8273
BioCentury BCIQSLC10A3
ClinGenSLC10A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8273
Chemical/Pharm GKB GenePA134886398
Clinical trialSLC10A3
Miscellaneous
canSAR (ICR)SLC10A3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC10A3
EVEXSLC10A3
GoPubMedSLC10A3
iHOPSLC10A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:15 CET 2017

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