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SLC10A4 (solute carrier family 10 member 4)

Identity

Alias (NCBI)P4
HGNC (Hugo) SLC10A4
HGNC Alias symbMGC29802
HGNC Previous namesolute carrier family 10, member 4
LocusID (NCBI) 201780
Atlas_Id 73272
Location 4p11  [Link to chromosome band 4p11]
Location_base_pair Starts at 48483343 and ends at 48489526 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SLC10A4   22980
Cards
Entrez_Gene (NCBI)SLC10A4    solute carrier family 10 member 4
AliasesP4
GeneCards (Weizmann)SLC10A4
Ensembl hg19 (Hinxton)ENSG00000145248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145248 [Gene_View]  ENSG00000145248 [Sequence]  chr4:48483343-48489526 [Contig_View]  SLC10A4 [Vega]
ICGC DataPortalENSG00000145248
TCGA cBioPortalSLC10A4
AceView (NCBI)SLC10A4
Genatlas (Paris)SLC10A4
SOURCE (Princeton)SLC10A4
Genetics Home Reference (NIH)SLC10A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC10A4  -     chr4:48483343-48489526 +  4p11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC10A4  -     4p11   [Description]    (hg19-Feb_2009)
GoldenPathSLC10A4 - 4p11 [CytoView hg19]  SLC10A4 - 4p11 [CytoView hg38]
ImmunoBaseENSG00000145248
Genome Data Viewer NCBISLC10A4 [Mapview hg19]  
OMIM618563   
Gene and transcription
Genbank (Entrez)AA776274 AI421729 AK126542 AY704414 BC012048
RefSeq transcript (Entrez)NM_152679
Consensus coding sequences : CCDS (NCBI)SLC10A4
Gene ExpressionSLC10A4 [ NCBI-GEO ]   SLC10A4 [ EBI - ARRAY_EXPRESS ]   SLC10A4 [ SEEK ]   SLC10A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC10A4 [ Firebrowse - Broad ]
GenevisibleExpression of SLC10A4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201780
GTEX Portal (Tissue expression)SLC10A4
Human Protein AtlasENSG00000145248-SLC10A4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EP9
PhosPhoSitePlusQ96EP9
Domains : Interpro (EBI)BilAc:Na_symport/Acr3    Bilac:Na_transpt    Na+/solute_symporter_sf    SLC10A4   
Domain families : Pfam (Sanger)SBF (PF01758)   
Domain families : Pfam (NCBI)pfam01758   
Conserved Domain (NCBI)SLC10A4
SuperfamilyQ96EP9
AlphaFold pdb e-kbQ96EP9   
Human Protein Atlas [tissue]ENSG00000145248-SLC10A4 [tissue]
HPRD11562
Protein Interaction databases
DIP (DOE-UCLA)Q96EP9
IntAct (EBI)Q96EP9
BioGRIDSLC10A4
STRING (EMBL)SLC10A4
ZODIACSLC10A4
Ontologies - Pathways
QuickGOQ96EP9
Ontology : AmiGOprotein binding  plasma membrane  sodium ion transport  bile acid:sodium symporter activity  bile acid and bile salt transport  integral component of membrane  transmembrane transport  
Ontology : EGO-EBIprotein binding  plasma membrane  sodium ion transport  bile acid:sodium symporter activity  bile acid and bile salt transport  integral component of membrane  transmembrane transport  
NDEx NetworkSLC10A4
Atlas of Cancer Signalling NetworkSLC10A4
Wikipedia pathwaysSLC10A4
Orthology - Evolution
OrthoDB201780
GeneTree (enSembl)ENSG00000145248
Phylogenetic Trees/Animal Genes : TreeFamSLC10A4
Homologs : HomoloGeneSLC10A4
Homology/Alignments : Family Browser (UCSC)SLC10A4
Gene fusions - Rearrangements
Fusion : QuiverSLC10A4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC10A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC10A4
dbVarSLC10A4
ClinVarSLC10A4
MonarchSLC10A4
1000_GenomesSLC10A4 
Exome Variant ServerSLC10A4
GNOMAD BrowserENSG00000145248
Varsome BrowserSLC10A4
ACMGSLC10A4 variants
VarityQ96EP9
Genomic Variants (DGV)SLC10A4 [DGVbeta]
DECIPHERSLC10A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC10A4 
Mutations
ICGC Data PortalSLC10A4 
TCGA Data PortalSLC10A4 
Broad Tumor PortalSLC10A4
OASIS PortalSLC10A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC10A4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC10A4
Mutations and Diseases : HGMDSLC10A4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSLC10A4
DgiDB (Drug Gene Interaction Database)SLC10A4
DoCM (Curated mutations)SLC10A4
CIViC (Clinical Interpretations of Variants in Cancer)SLC10A4
Cancer3DSLC10A4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618563   
Orphanet
DisGeNETSLC10A4
MedgenSLC10A4
Genetic Testing Registry SLC10A4
NextProtQ96EP9 [Medical]
GENETestsSLC10A4
Target ValidationSLC10A4
Huge Navigator SLC10A4 [HugePedia]
ClinGenSLC10A4
Clinical trials, drugs, therapy
MyCancerGenomeSLC10A4
Protein Interactions : CTDSLC10A4
Pharm GKB GenePA134941471
PharosQ96EP9
Clinical trialSLC10A4
Miscellaneous
canSAR (ICR)SLC10A4
HarmonizomeSLC10A4
DataMed IndexSLC10A4
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSLC10A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:20:38 CEST 2021

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