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SLC10A4 (solute carrier family 10 member 4)

Identity

Alias_namessolute carrier family 10, member 4
Alias_symbol (synonym)MGC29802
Other aliasP4
HGNC (Hugo) SLC10A4
LocusID (NCBI) 201780
Atlas_Id 73272
Location 4p11  [Link to chromosome band 4p11]
Location_base_pair Starts at 48483343 and ends at 48489524 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC10A4   22980
Cards
Entrez_Gene (NCBI)SLC10A4  201780  solute carrier family 10 member 4
AliasesP4
GeneCards (Weizmann)SLC10A4
Ensembl hg19 (Hinxton)ENSG00000145248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145248 [Gene_View]  chr4:48483343-48489524 [Contig_View]  SLC10A4 [Vega]
ICGC DataPortalENSG00000145248
TCGA cBioPortalSLC10A4
AceView (NCBI)SLC10A4
Genatlas (Paris)SLC10A4
WikiGenes201780
SOURCE (Princeton)SLC10A4
Genetics Home Reference (NIH)SLC10A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC10A4  -     chr4:48483343-48489524 +  4p11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC10A4  -     4p11   [Description]    (hg19-Feb_2009)
EnsemblSLC10A4 - 4p11 [CytoView hg19]  SLC10A4 - 4p11 [CytoView hg38]
Mapping of homologs : NCBISLC10A4 [Mapview hg19]  SLC10A4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA776274 AI421729 AK126542 AY704414 BC012048
RefSeq transcript (Entrez)NM_152679
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC10A4
Cluster EST : UnigeneHs.132591 [ NCBI ]
CGAP (NCI)Hs.132591
Alternative Splicing GalleryENSG00000145248
Gene ExpressionSLC10A4 [ NCBI-GEO ]   SLC10A4 [ EBI - ARRAY_EXPRESS ]   SLC10A4 [ SEEK ]   SLC10A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC10A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201780
GTEX Portal (Tissue expression)SLC10A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EP9
Splice isoforms : SwissVarQ96EP9
PhosPhoSitePlusQ96EP9
Domains : Interpro (EBI)BilAc:Na_symport/Acr3    Bilac:Na_transpt   
Domain families : Pfam (Sanger)SBF (PF01758)   
Domain families : Pfam (NCBI)pfam01758   
Conserved Domain (NCBI)SLC10A4
DMDM Disease mutations201780
Blocks (Seattle)SLC10A4
SuperfamilyQ96EP9
Human Protein AtlasENSG00000145248
Peptide AtlasQ96EP9
HPRD11562
IPIIPI00157034   
Protein Interaction databases
DIP (DOE-UCLA)Q96EP9
IntAct (EBI)Q96EP9
FunCoupENSG00000145248
BioGRIDSLC10A4
STRING (EMBL)SLC10A4
ZODIACSLC10A4
Ontologies - Pathways
QuickGOQ96EP9
Ontology : AmiGOplasma membrane  sodium ion transport  bile acid:sodium symporter activity  bile acid and bile salt transport  integral component of membrane  transmembrane transport  
Ontology : EGO-EBIplasma membrane  sodium ion transport  bile acid:sodium symporter activity  bile acid and bile salt transport  integral component of membrane  transmembrane transport  
NDEx NetworkSLC10A4
Atlas of Cancer Signalling NetworkSLC10A4
Wikipedia pathwaysSLC10A4
Orthology - Evolution
OrthoDB201780
GeneTree (enSembl)ENSG00000145248
Phylogenetic Trees/Animal Genes : TreeFamSLC10A4
HOVERGENQ96EP9
HOGENOMQ96EP9
Homologs : HomoloGeneSLC10A4
Homology/Alignments : Family Browser (UCSC)SLC10A4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC10A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC10A4
dbVarSLC10A4
ClinVarSLC10A4
1000_GenomesSLC10A4 
Exome Variant ServerSLC10A4
ExAC (Exome Aggregation Consortium)SLC10A4 (select the gene name)
Genetic variants : HAPMAP201780
Genomic Variants (DGV)SLC10A4 [DGVbeta]
DECIPHERSLC10A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC10A4 
Mutations
ICGC Data PortalSLC10A4 
TCGA Data PortalSLC10A4 
Broad Tumor PortalSLC10A4
OASIS PortalSLC10A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC10A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC10A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC10A4
DgiDB (Drug Gene Interaction Database)SLC10A4
DoCM (Curated mutations)SLC10A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC10A4 (select a term)
intoGenSLC10A4
Cancer3DSLC10A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC10A4
Genetic Testing Registry SLC10A4
NextProtQ96EP9 [Medical]
TSGene201780
GENETestsSLC10A4
Target ValidationSLC10A4
Huge Navigator SLC10A4 [HugePedia]
snp3D : Map Gene to Disease201780
BioCentury BCIQSLC10A4
ClinGenSLC10A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201780
Chemical/Pharm GKB GenePA134941471
Clinical trialSLC10A4
Miscellaneous
canSAR (ICR)SLC10A4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC10A4
EVEXSLC10A4
GoPubMedSLC10A4
iHOPSLC10A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:52 CEST 2017

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