Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC10A5 (solute carrier family 10 member 5)

Identity

Alias_namessolute carrier family 10, member 5
Other aliasP5
HGNC (Hugo) SLC10A5
LocusID (NCBI) 347051
Atlas_Id 73273
Location 8q21.13  [Link to chromosome band 8q21]
Location_base_pair Starts at 81693656 and ends at 81694972 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC10A5   22981
Cards
Entrez_Gene (NCBI)SLC10A5  347051  solute carrier family 10 member 5
AliasesP5
GeneCards (Weizmann)SLC10A5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:81693656-81694972 [Contig_View]  SLC10A5 [Vega]
TCGA cBioPortalSLC10A5
AceView (NCBI)SLC10A5
Genatlas (Paris)SLC10A5
WikiGenes347051
SOURCE (Princeton)SLC10A5
Genetics Home Reference (NIH)SLC10A5
Genomic and cartography
GoldenPath hg38 (UCSC)SLC10A5  -     chr8:81693656-81694972 -  8q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC10A5  -     8q21.13   [Description]    (hg19-Feb_2009)
EnsemblSLC10A5 - 8q21.13 [CytoView hg19]  SLC10A5 - 8q21.13 [CytoView hg38]
Mapping of homologs : NCBISLC10A5 [Mapview hg19]  SLC10A5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095808 AY825924 BC136625 BC136631
RefSeq transcript (Entrez)NM_001010893
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC10A5
Cluster EST : UnigeneHs.683849 [ NCBI ]
CGAP (NCI)Hs.683849
Gene ExpressionSLC10A5 [ NCBI-GEO ]   SLC10A5 [ EBI - ARRAY_EXPRESS ]   SLC10A5 [ SEEK ]   SLC10A5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC10A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347051
GTEX Portal (Tissue expression)SLC10A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5PT55   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5PT55  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5PT55
Splice isoforms : SwissVarQ5PT55
PhosPhoSitePlusQ5PT55
Domains : Interpro (EBI)BilAc:Na_symport/Acr3    Bilac:Na_transpt    SLC10A5   
Domain families : Pfam (Sanger)SBF (PF01758)   
Domain families : Pfam (NCBI)pfam01758   
Conserved Domain (NCBI)SLC10A5
DMDM Disease mutations347051
Blocks (Seattle)SLC10A5
SuperfamilyQ5PT55
Peptide AtlasQ5PT55
HPRD18053
IPIIPI00401216   
Protein Interaction databases
DIP (DOE-UCLA)Q5PT55
IntAct (EBI)Q5PT55
BioGRIDSLC10A5
STRING (EMBL)SLC10A5
ZODIACSLC10A5
Ontologies - Pathways
QuickGOQ5PT55
Ontology : AmiGOsodium ion transport  bile acid:sodium symporter activity  bile acid and bile salt transport  integral component of membrane  transmembrane transport  
Ontology : EGO-EBIsodium ion transport  bile acid:sodium symporter activity  bile acid and bile salt transport  integral component of membrane  transmembrane transport  
NDEx NetworkSLC10A5
Atlas of Cancer Signalling NetworkSLC10A5
Wikipedia pathwaysSLC10A5
Orthology - Evolution
OrthoDB347051
Phylogenetic Trees/Animal Genes : TreeFamSLC10A5
HOVERGENQ5PT55
HOGENOMQ5PT55
Homologs : HomoloGeneSLC10A5
Homology/Alignments : Family Browser (UCSC)SLC10A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC10A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC10A5
dbVarSLC10A5
ClinVarSLC10A5
1000_GenomesSLC10A5 
Exome Variant ServerSLC10A5
ExAC (Exome Aggregation Consortium)SLC10A5 (select the gene name)
Genetic variants : HAPMAP347051
Genomic Variants (DGV)SLC10A5 [DGVbeta]
DECIPHERSLC10A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC10A5 
Mutations
ICGC Data PortalSLC10A5 
TCGA Data PortalSLC10A5 
Broad Tumor PortalSLC10A5
OASIS PortalSLC10A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC10A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC10A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC10A5
DgiDB (Drug Gene Interaction Database)SLC10A5
DoCM (Curated mutations)SLC10A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC10A5 (select a term)
intoGenSLC10A5
Cancer3DSLC10A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC10A5
Genetic Testing Registry SLC10A5
NextProtQ5PT55 [Medical]
TSGene347051
GENETestsSLC10A5
Target ValidationSLC10A5
Huge Navigator SLC10A5 [HugePedia]
snp3D : Map Gene to Disease347051
BioCentury BCIQSLC10A5
ClinGenSLC10A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347051
Chemical/Pharm GKB GenePA134933839
Clinical trialSLC10A5
Miscellaneous
canSAR (ICR)SLC10A5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC10A5
EVEXSLC10A5
GoPubMedSLC10A5
iHOPSLC10A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:52 CEST 2017

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