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SLC10A6 (solute carrier family 10 member 6)

Identity

Alias (NCBI)SOAT
HGNC (Hugo) SLC10A6
HGNC Alias symbSOAT
HGNC Previous namesolute carrier family 10 (sodium/bile acid cotransporter), member 6
LocusID (NCBI) 345274
Atlas_Id 73274
Location 4q21.3  [Link to chromosome band 4q21]
Location_base_pair Starts at 86823468 and ends at 86849263 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC10A6   30603
Cards
Entrez_Gene (NCBI)SLC10A6  345274  solute carrier family 10 member 6
AliasesSOAT
GeneCards (Weizmann)SLC10A6
Ensembl hg19 (Hinxton)ENSG00000145283 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145283 [Gene_View]  ENSG00000145283 [Sequence]  chr4:86823468-86849263 [Contig_View]  SLC10A6 [Vega]
ICGC DataPortalENSG00000145283
TCGA cBioPortalSLC10A6
AceView (NCBI)SLC10A6
Genatlas (Paris)SLC10A6
WikiGenes345274
SOURCE (Princeton)SLC10A6
Genetics Home Reference (NIH)SLC10A6
Genomic and cartography
GoldenPath hg38 (UCSC)SLC10A6  -     chr4:86823468-86849263 -  4q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC10A6  -     4q21.3   [Description]    (hg19-Feb_2009)
GoldenPathSLC10A6 - 4q21.3 [CytoView hg19]  SLC10A6 - 4q21.3 [CytoView hg38]
ImmunoBaseENSG00000145283
genome Data Viewer NCBISLC10A6 [Mapview hg19]  
OMIM613366   
Gene and transcription
Genbank (Entrez)AJ583502 BC107051 BC107052 EF437223
RefSeq transcript (Entrez)NM_197965
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC10A6
Alternative Splicing GalleryENSG00000145283
Gene ExpressionSLC10A6 [ NCBI-GEO ]   SLC10A6 [ EBI - ARRAY_EXPRESS ]   SLC10A6 [ SEEK ]   SLC10A6 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC10A6 [ Firebrowse - Broad ]
GenevisibleExpression of SLC10A6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)345274
GTEX Portal (Tissue expression)SLC10A6
Human Protein AtlasENSG00000145283-SLC10A6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KNW5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KNW5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KNW5
Splice isoforms : SwissVarQ3KNW5
PhosPhoSitePlusQ3KNW5
Domains : Interpro (EBI)BilAc:Na_symport/Acr3    Bilac:Na_transpt    Na+/solute_symporter_sf    SLC10A6   
Domain families : Pfam (Sanger)SBF (PF01758)   
Domain families : Pfam (NCBI)pfam01758   
Conserved Domain (NCBI)SLC10A6
DMDM Disease mutations345274
Blocks (Seattle)SLC10A6
SuperfamilyQ3KNW5
Human Protein Atlas [tissue]ENSG00000145283-SLC10A6 [tissue]
Peptide AtlasQ3KNW5
HPRD11593
IPIIPI00234679   IPI00964814   
Protein Interaction databases
DIP (DOE-UCLA)Q3KNW5
IntAct (EBI)Q3KNW5
FunCoupENSG00000145283
BioGRIDSLC10A6
STRING (EMBL)SLC10A6
ZODIACSLC10A6
Ontologies - Pathways
QuickGOQ3KNW5
Ontology : AmiGOplasma membrane  sodium ion transport  bile acid:sodium symporter activity  bile acid:sodium symporter activity  bile acid and bile salt transport  integral component of membrane  sodium-dependent organic anion transmembrane transporter activity  sodium-dependent organic anion transport  transmembrane transport  
Ontology : EGO-EBIplasma membrane  sodium ion transport  bile acid:sodium symporter activity  bile acid:sodium symporter activity  bile acid and bile salt transport  integral component of membrane  sodium-dependent organic anion transmembrane transporter activity  sodium-dependent organic anion transport  transmembrane transport  
NDEx NetworkSLC10A6
Atlas of Cancer Signalling NetworkSLC10A6
Wikipedia pathwaysSLC10A6
Orthology - Evolution
OrthoDB345274
GeneTree (enSembl)ENSG00000145283
Phylogenetic Trees/Animal Genes : TreeFamSLC10A6
HOGENOMQ3KNW5
Homologs : HomoloGeneSLC10A6
Homology/Alignments : Family Browser (UCSC)SLC10A6
Gene fusions - Rearrangements
Fusion : QuiverSLC10A6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC10A6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC10A6
dbVarSLC10A6
ClinVarSLC10A6
1000_GenomesSLC10A6 
Exome Variant ServerSLC10A6
GNOMAD BrowserENSG00000145283
Varsome BrowserSLC10A6
Genetic variants : HAPMAP345274
Genomic Variants (DGV)SLC10A6 [DGVbeta]
DECIPHERSLC10A6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC10A6 
Mutations
ICGC Data PortalSLC10A6 
TCGA Data PortalSLC10A6 
Broad Tumor PortalSLC10A6
OASIS PortalSLC10A6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC10A6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSLC10A6
Mutations and Diseases : HGMDSLC10A6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC10A6
DgiDB (Drug Gene Interaction Database)SLC10A6
DoCM (Curated mutations)SLC10A6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC10A6 (select a term)
intoGenSLC10A6
Cancer3DSLC10A6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613366   
Orphanet
DisGeNETSLC10A6
MedgenSLC10A6
Genetic Testing Registry SLC10A6
NextProtQ3KNW5 [Medical]
TSGene345274
GENETestsSLC10A6
Target ValidationSLC10A6
Huge Navigator SLC10A6 [HugePedia]
snp3D : Map Gene to Disease345274
BioCentury BCIQSLC10A6
ClinGenSLC10A6
Clinical trials, drugs, therapy
Protein Interactions : CTD345274
Pharm GKB GenePA142670910
Clinical trialSLC10A6
Miscellaneous
canSAR (ICR)SLC10A6 (select the gene name)
HarmonizomeSLC10A6
DataMed IndexSLC10A6
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC10A6
EVEXSLC10A6
GoPubMedSLC10A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:34:23 CEST 2020

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