Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC10A7 (solute carrier family 10 member 7)

Identity

Alias_namesC4orf13
chromosome 4 open reading frame 13
solute carrier family 10, member 7
Alias_symbol (synonym)MGC25043
DKFZp566M114
DKFZp313H0531
DKFZp779O2438
Other aliasP7
HGNC (Hugo) SLC10A7
LocusID (NCBI) 84068
Atlas_Id 73275
Location 4q31.22  [Link to chromosome band 4q31]
Location_base_pair Starts at 146253988 and ends at 146521971 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IARS (9q22.31) / SLC10A7 (4q31.22)NAA15 (4q31.1) / SLC10A7 (4q31.22)SLC10A7 (4q31.22) / EYS (6q12)
SLC10A7 (4q31.22) / TTC29 (4q31.22)SLC10A7 TTC29SLC10A7 EYS

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC10A7   23088
Cards
Entrez_Gene (NCBI)SLC10A7  84068  solute carrier family 10 member 7
AliasesC4orf13; P7
GeneCards (Weizmann)SLC10A7
Ensembl hg19 (Hinxton)ENSG00000120519 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120519 [Gene_View]  chr4:146253988-146521971 [Contig_View]  SLC10A7 [Vega]
ICGC DataPortalENSG00000120519
TCGA cBioPortalSLC10A7
AceView (NCBI)SLC10A7
Genatlas (Paris)SLC10A7
WikiGenes84068
SOURCE (Princeton)SLC10A7
Genetics Home Reference (NIH)SLC10A7
Genomic and cartography
GoldenPath hg38 (UCSC)SLC10A7  -     chr4:146253988-146521971 -  4q31.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC10A7  -     4q31.22   [Description]    (hg19-Feb_2009)
EnsemblSLC10A7 - 4q31.22 [CytoView hg19]  SLC10A7 - 4q31.22 [CytoView hg38]
Mapping of homologs : NCBISLC10A7 [Mapview hg19]  SLC10A7 [Mapview hg38]
OMIM611459   
Gene and transcription
Genbank (Entrez)AK075364 AK126000 AK172727 AK291046 AL136728
RefSeq transcript (Entrez)NM_001029998 NM_001030316 NM_001300842 NM_001317816 NM_001317817 NM_001317818 NM_032128
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC10A7
Cluster EST : UnigeneHs.659209 [ NCBI ]
CGAP (NCI)Hs.659209
Alternative Splicing GalleryENSG00000120519
Gene ExpressionSLC10A7 [ NCBI-GEO ]   SLC10A7 [ EBI - ARRAY_EXPRESS ]   SLC10A7 [ SEEK ]   SLC10A7 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC10A7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84068
GTEX Portal (Tissue expression)SLC10A7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0GE19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0GE19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0GE19
Splice isoforms : SwissVarQ0GE19
PhosPhoSitePlusQ0GE19
Domains : Interpro (EBI)Put_Na-Bile_cotransptr   
Domain families : Pfam (Sanger)SBF_like (PF13593)   
Domain families : Pfam (NCBI)pfam13593   
Conserved Domain (NCBI)SLC10A7
DMDM Disease mutations84068
Blocks (Seattle)SLC10A7
SuperfamilyQ0GE19
Human Protein AtlasENSG00000120519
Peptide AtlasQ0GE19
HPRD13177
IPIIPI00828068   IPI00553225   IPI00827683   IPI00640513   IPI00030239   IPI00827918   IPI00827490   
Protein Interaction databases
DIP (DOE-UCLA)Q0GE19
IntAct (EBI)Q0GE19
FunCoupENSG00000120519
BioGRIDSLC10A7
STRING (EMBL)SLC10A7
ZODIACSLC10A7
Ontologies - Pathways
QuickGOQ0GE19
Ontology : AmiGOsodium ion transport  symporter activity  integral component of membrane  transmembrane transport  
Ontology : EGO-EBIsodium ion transport  symporter activity  integral component of membrane  transmembrane transport  
NDEx NetworkSLC10A7
Atlas of Cancer Signalling NetworkSLC10A7
Wikipedia pathwaysSLC10A7
Orthology - Evolution
OrthoDB84068
GeneTree (enSembl)ENSG00000120519
Phylogenetic Trees/Animal Genes : TreeFamSLC10A7
HOVERGENQ0GE19
HOGENOMQ0GE19
Homologs : HomoloGeneSLC10A7
Homology/Alignments : Family Browser (UCSC)SLC10A7
Gene fusions - Rearrangements
Fusion: TCGASLC10A7 TTC29
Fusion: TCGASLC10A7 EYS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC10A7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC10A7
dbVarSLC10A7
ClinVarSLC10A7
1000_GenomesSLC10A7 
Exome Variant ServerSLC10A7
ExAC (Exome Aggregation Consortium)SLC10A7 (select the gene name)
Genetic variants : HAPMAP84068
Genomic Variants (DGV)SLC10A7 [DGVbeta]
DECIPHERSLC10A7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC10A7 
Mutations
ICGC Data PortalSLC10A7 
TCGA Data PortalSLC10A7 
Broad Tumor PortalSLC10A7
OASIS PortalSLC10A7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC10A7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC10A7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC10A7
DgiDB (Drug Gene Interaction Database)SLC10A7
DoCM (Curated mutations)SLC10A7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC10A7 (select a term)
intoGenSLC10A7
Cancer3DSLC10A7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611459   
Orphanet
MedgenSLC10A7
Genetic Testing Registry SLC10A7
NextProtQ0GE19 [Medical]
TSGene84068
GENETestsSLC10A7
Target ValidationSLC10A7
Huge Navigator SLC10A7 [HugePedia]
snp3D : Map Gene to Disease84068
BioCentury BCIQSLC10A7
ClinGenSLC10A7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84068
Chemical/Pharm GKB GenePA162403478
Clinical trialSLC10A7
Miscellaneous
canSAR (ICR)SLC10A7 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC10A7
EVEXSLC10A7
GoPubMedSLC10A7
iHOPSLC10A7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:52 CEST 2017

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