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SLC12A5-AS1 (SLC12A5 and MMP9 antisense RNA 1)

Identity

Alias_symbol (synonym)RP11-465L10.10
Other alias-
HGNC (Hugo) SLC12A5-AS1
LocusID (NCBI) 109729184
Atlas_Id 79473
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 46013502 and ends at 46022073 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SLC12A5-AS1   53143
Cards
Entrez_Gene (NCBI)SLC12A5-AS1  109729184  SLC12A5 and MMP9 antisense RNA 1
Aliases
GeneCards (Weizmann)SLC12A5-AS1
Ensembl hg19 (Hinxton)ENSG00000204044 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204044 [Gene_View]  chr20:46013502-46022073 [Contig_View]  SLC12A5-AS1 [Vega]
ICGC DataPortalENSG00000204044
TCGA cBioPortalSLC12A5-AS1
AceView (NCBI)SLC12A5-AS1
Genatlas (Paris)SLC12A5-AS1
WikiGenes109729184
SOURCE (Princeton)SLC12A5-AS1
Genetics Home Reference (NIH)SLC12A5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC12A5-AS1  -     chr20:46013502-46022073 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC12A5-AS1  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblSLC12A5-AS1 - 20q13.12 [CytoView hg19]  SLC12A5-AS1 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBISLC12A5-AS1 [Mapview hg19]  SLC12A5-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123156
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC12A5-AS1
Cluster EST : UnigeneHs.675276 [ NCBI ]
CGAP (NCI)Hs.675276
Alternative Splicing GalleryENSG00000204044
Gene ExpressionSLC12A5-AS1 [ NCBI-GEO ]   SLC12A5-AS1 [ EBI - ARRAY_EXPRESS ]   SLC12A5-AS1 [ SEEK ]   SLC12A5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC12A5-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109729184
GTEX Portal (Tissue expression)SLC12A5-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC12A5-AS1
DMDM Disease mutations109729184
Blocks (Seattle)SLC12A5-AS1
Human Protein AtlasENSG00000204044
Protein Interaction databases
FunCoupENSG00000204044
BioGRIDSLC12A5-AS1
STRING (EMBL)SLC12A5-AS1
ZODIACSLC12A5-AS1
Ontologies - Pathways
Huge Navigator SLC12A5-AS1 [HugePedia]
snp3D : Map Gene to Disease109729184
BioCentury BCIQSLC12A5-AS1
ClinGenSLC12A5-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109729184
Clinical trialSLC12A5-AS1
Miscellaneous
canSAR (ICR)SLC12A5-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC12A5-AS1
EVEXSLC12A5-AS1
GoPubMedSLC12A5-AS1
iHOPSLC12A5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:52 CEST 2017

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