Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC12A9 (solute carrier family 12, member 9)

Identity

Alias_symbol (synonym)CIP1
Other aliasCCC6
WO3.3
hCCC6
HGNC (Hugo) SLC12A9
LocusID (NCBI) 56996
Atlas_Id 73276
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100450341 and ends at 100463160 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SLC12A9 (7q22.1) / EGFR (7p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC12A9   17435
Cards
Entrez_Gene (NCBI)SLC12A9  56996  solute carrier family 12, member 9
AliasesCCC6; CIP1; WO3.3; hCCC6
GeneCards (Weizmann)SLC12A9
Ensembl hg19 (Hinxton)ENSG00000146828 [Gene_View]  chr7:100450341-100463160 [Contig_View]  SLC12A9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000146828 [Gene_View]  chr7:100450341-100463160 [Contig_View]  SLC12A9 [Vega]
ICGC DataPortalENSG00000146828
TCGA cBioPortalSLC12A9
AceView (NCBI)SLC12A9
Genatlas (Paris)SLC12A9
WikiGenes56996
SOURCE (Princeton)SLC12A9
Genetics Home Reference (NIH)SLC12A9
Genomic and cartography
GoldenPath hg19 (UCSC)SLC12A9  -     chr7:100450341-100463160 +  7q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC12A9  -     7q22.1   [Description]    (hg38-Dec_2013)
EnsemblSLC12A9 - 7q22.1 [CytoView hg19]  SLC12A9 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBISLC12A9 [Mapview hg19]  SLC12A9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA825567 AB033284 AF284422 AK024420 AK024421
RefSeq transcript (Entrez)NM_001267812 NM_001267814 NM_020246
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)SLC12A9
Cluster EST : UnigeneHs.521087 [ NCBI ]
CGAP (NCI)Hs.521087
Alternative Splicing GalleryENSG00000146828
Gene ExpressionSLC12A9 [ NCBI-GEO ]   SLC12A9 [ EBI - ARRAY_EXPRESS ]   SLC12A9 [ SEEK ]   SLC12A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC12A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56996
GTEX Portal (Tissue expression)SLC12A9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXP2
Splice isoforms : SwissVarQ9BXP2
PhosPhoSitePlusQ9BXP2
Domains : Interpro (EBI)AA-permease/SLC12A_dom    SLC12A9   
Domain families : Pfam (Sanger)AA_permease (PF00324)   
Domain families : Pfam (NCBI)pfam00324   
Conserved Domain (NCBI)SLC12A9
DMDM Disease mutations56996
Blocks (Seattle)SLC12A9
SuperfamilyQ9BXP2
Human Protein AtlasENSG00000146828
Peptide AtlasQ9BXP2
HPRD11564
IPIIPI00387077   IPI00027911   IPI00890771   IPI01011304   IPI01010018   IPI00926643   IPI00926422   IPI00925980   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXP2
IntAct (EBI)Q9BXP2
FunCoupENSG00000146828
BioGRIDSLC12A9
STRING (EMBL)SLC12A9
ZODIACSLC12A9
Ontologies - Pathways
QuickGOQ9BXP2
Ontology : AmiGOplasma membrane  chloride transport  cation:chloride symporter activity  integral component of membrane  extracellular exosome  chloride transmembrane transport  
Ontology : EGO-EBIplasma membrane  chloride transport  cation:chloride symporter activity  integral component of membrane  extracellular exosome  chloride transmembrane transport  
NDEx NetworkSLC12A9
Atlas of Cancer Signalling NetworkSLC12A9
Wikipedia pathwaysSLC12A9
Orthology - Evolution
OrthoDB56996
GeneTree (enSembl)ENSG00000146828
Phylogenetic Trees/Animal Genes : TreeFamSLC12A9
HOVERGENQ9BXP2
HOGENOMQ9BXP2
Homologs : HomoloGeneSLC12A9
Homology/Alignments : Family Browser (UCSC)SLC12A9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC12A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC12A9
dbVarSLC12A9
ClinVarSLC12A9
1000_GenomesSLC12A9 
Exome Variant ServerSLC12A9
ExAC (Exome Aggregation Consortium)SLC12A9 (select the gene name)
Genetic variants : HAPMAP56996
Genomic Variants (DGV)SLC12A9 [DGVbeta]
DECIPHER (Syndromes)7:100450341-100463160  ENSG00000146828
CONAN: Copy Number AnalysisSLC12A9 
Mutations
ICGC Data PortalSLC12A9 
TCGA Data PortalSLC12A9 
Broad Tumor PortalSLC12A9
OASIS PortalSLC12A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC12A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC12A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC12A9
DgiDB (Drug Gene Interaction Database)SLC12A9
DoCM (Curated mutations)SLC12A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC12A9 (select a term)
intoGenSLC12A9
Cancer3DSLC12A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC12A9
Genetic Testing Registry SLC12A9
NextProtQ9BXP2 [Medical]
TSGene56996
GENETestsSLC12A9
Huge Navigator SLC12A9 [HugePedia]
snp3D : Map Gene to Disease56996
BioCentury BCIQSLC12A9
ClinGenSLC12A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56996
Chemical/Pharm GKB GenePA134921585
Clinical trialSLC12A9
Miscellaneous
canSAR (ICR)SLC12A9 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC12A9
EVEXSLC12A9
GoPubMedSLC12A9
iHOPSLC12A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:16 CET 2017

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