Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC13A1 (solute carrier family 13 member 1)

Identity

Alias_namessolute carrier family 13 (sodium/sulphate symporters), member 1
solute carrier family 13 (sodium/sulfate symporter), member 1
Alias_symbol (synonym)NaSi-1
NAS1
Other alias
HGNC (Hugo) SLC13A1
LocusID (NCBI) 6561
Atlas_Id 73277
Location 7q31.32  [Link to chromosome band 7q31]
Location_base_pair Starts at 123113534 and ends at 123199971 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC13A1   10916
Cards
Entrez_Gene (NCBI)SLC13A1  6561  solute carrier family 13 member 1
AliasesNAS1; NaSi-1
GeneCards (Weizmann)SLC13A1
Ensembl hg19 (Hinxton)ENSG00000081800 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000081800 [Gene_View]  chr7:123113534-123199971 [Contig_View]  SLC13A1 [Vega]
ICGC DataPortalENSG00000081800
TCGA cBioPortalSLC13A1
AceView (NCBI)SLC13A1
Genatlas (Paris)SLC13A1
WikiGenes6561
SOURCE (Princeton)SLC13A1
Genetics Home Reference (NIH)SLC13A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC13A1  -     chr7:123113534-123199971 -  7q31.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC13A1  -     7q31.32   [Description]    (hg19-Feb_2009)
EnsemblSLC13A1 - 7q31.32 [CytoView hg19]  SLC13A1 - 7q31.32 [CytoView hg38]
Mapping of homologs : NCBISLC13A1 [Mapview hg19]  SLC13A1 [Mapview hg38]
OMIM606193   
Gene and transcription
Genbank (Entrez)AF260824 AI209074 AI469201 AK026413 AK314537
RefSeq transcript (Entrez)NM_001324400 NM_022444
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC13A1
Cluster EST : UnigeneHs.489849 [ NCBI ]
CGAP (NCI)Hs.489849
Alternative Splicing GalleryENSG00000081800
Gene ExpressionSLC13A1 [ NCBI-GEO ]   SLC13A1 [ EBI - ARRAY_EXPRESS ]   SLC13A1 [ SEEK ]   SLC13A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC13A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6561
GTEX Portal (Tissue expression)SLC13A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZW2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZW2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZW2
Splice isoforms : SwissVarQ9BZW2
PhosPhoSitePlusQ9BZW2
Domaine pattern : Prosite (Expaxy)NA_SULFATE (PS01271)   
Domains : Interpro (EBI)Na/sul_symport    Na/sul_symport_CS   
Domain families : Pfam (Sanger)Na_sulph_symp (PF00939)   
Domain families : Pfam (NCBI)pfam00939   
Conserved Domain (NCBI)SLC13A1
DMDM Disease mutations6561
Blocks (Seattle)SLC13A1
SuperfamilyQ9BZW2
Human Protein AtlasENSG00000081800
Peptide AtlasQ9BZW2
HPRD08394
IPIIPI00097548   IPI01010043   IPI00925295   IPI00925543   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZW2
IntAct (EBI)Q9BZW2
FunCoupENSG00000081800
BioGRIDSLC13A1
STRING (EMBL)SLC13A1
ZODIACSLC13A1
Ontologies - Pathways
QuickGOQ9BZW2
Ontology : AmiGOplasma membrane  integral component of plasma membrane  sulfate transport  sodium:sulfate symporter activity  sodium:sulfate symporter activity  sodium ion transmembrane transport  sulfate transmembrane transport  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  sulfate transport  sodium:sulfate symporter activity  sodium:sulfate symporter activity  sodium ion transmembrane transport  sulfate transmembrane transport  
NDEx NetworkSLC13A1
Atlas of Cancer Signalling NetworkSLC13A1
Wikipedia pathwaysSLC13A1
Orthology - Evolution
OrthoDB6561
GeneTree (enSembl)ENSG00000081800
Phylogenetic Trees/Animal Genes : TreeFamSLC13A1
HOVERGENQ9BZW2
HOGENOMQ9BZW2
Homologs : HomoloGeneSLC13A1
Homology/Alignments : Family Browser (UCSC)SLC13A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC13A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC13A1
dbVarSLC13A1
ClinVarSLC13A1
1000_GenomesSLC13A1 
Exome Variant ServerSLC13A1
ExAC (Exome Aggregation Consortium)SLC13A1 (select the gene name)
Genetic variants : HAPMAP6561
Genomic Variants (DGV)SLC13A1 [DGVbeta]
DECIPHERSLC13A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC13A1 
Mutations
ICGC Data PortalSLC13A1 
TCGA Data PortalSLC13A1 
Broad Tumor PortalSLC13A1
OASIS PortalSLC13A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC13A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC13A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC13A1
DgiDB (Drug Gene Interaction Database)SLC13A1
DoCM (Curated mutations)SLC13A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC13A1 (select a term)
intoGenSLC13A1
Cancer3DSLC13A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606193   
Orphanet
MedgenSLC13A1
Genetic Testing Registry SLC13A1
NextProtQ9BZW2 [Medical]
TSGene6561
GENETestsSLC13A1
Target ValidationSLC13A1
Huge Navigator SLC13A1 [HugePedia]
snp3D : Map Gene to Disease6561
BioCentury BCIQSLC13A1
ClinGenSLC13A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6561
Chemical/Pharm GKB GenePA322
Clinical trialSLC13A1
Miscellaneous
canSAR (ICR)SLC13A1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC13A1
EVEXSLC13A1
GoPubMedSLC13A1
iHOPSLC13A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:53 CEST 2017

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