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SLC13A2 (solute carrier family 13 member 2)

Identity

Other aliasNADC1
NaCT
NaDC-1
SDCT1
HGNC (Hugo) SLC13A2
LocusID (NCBI) 9058
Atlas_Id 57003
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 28473646 and ends at 28497780 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM168A (11q13.4) / SLC13A2 (17q11.2)FAM217B (20q13.33) / SLC13A2 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC13A2   10917
Cards
Entrez_Gene (NCBI)SLC13A2  9058  solute carrier family 13 member 2
AliasesNADC1; NaCT; NaDC-1; SDCT1
GeneCards (Weizmann)SLC13A2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:28473646-28497780 [Contig_View]  SLC13A2 [Vega]
TCGA cBioPortalSLC13A2
AceView (NCBI)SLC13A2
Genatlas (Paris)SLC13A2
WikiGenes9058
SOURCE (Princeton)SLC13A2
Genetics Home Reference (NIH)SLC13A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC13A2  -     chr17:28473646-28497780 +  17q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC13A2  -     17q11.2   [Description]    (hg19-Feb_2009)
EnsemblSLC13A2 - 17q11.2 [CytoView hg19]  SLC13A2 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBISLC13A2 [Mapview hg19]  SLC13A2 [Mapview hg38]
OMIM604148   
Gene and transcription
Genbank (Entrez)AK091926 AK298388 AK303909 AK303936 AK314684
RefSeq transcript (Entrez)NM_001145975 NM_001145976 NM_001346683 NM_001346684 NM_003984
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC13A2
Cluster EST : UnigeneHs.102307 [ NCBI ]
CGAP (NCI)Hs.102307
Gene ExpressionSLC13A2 [ NCBI-GEO ]   SLC13A2 [ EBI - ARRAY_EXPRESS ]   SLC13A2 [ SEEK ]   SLC13A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC13A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9058
GTEX Portal (Tissue expression)SLC13A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13183   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13183  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13183
Splice isoforms : SwissVarQ13183
PhosPhoSitePlusQ13183
Domaine pattern : Prosite (Expaxy)NA_SULFATE (PS01271)   
Domains : Interpro (EBI)Na/sul_symport    Na/sul_symport_CS   
Domain families : Pfam (Sanger)Na_sulph_symp (PF00939)   
Domain families : Pfam (NCBI)pfam00939   
Conserved Domain (NCBI)SLC13A2
DMDM Disease mutations9058
Blocks (Seattle)SLC13A2
SuperfamilyQ13183
Peptide AtlasQ13183
IPIIPI00011981   IPI01009453   IPI00927524   IPI00908933   IPI00924589   
Protein Interaction databases
DIP (DOE-UCLA)Q13183
IntAct (EBI)Q13183
BioGRIDSLC13A2
STRING (EMBL)SLC13A2
ZODIACSLC13A2
Ontologies - Pathways
QuickGOQ13183
Ontology : AmiGOtransporter activity  plasma membrane  integral component of plasma membrane  transport  sodium ion transport  dicarboxylic acid transport  low-affinity sodium:dicarboxylate symporter activity  membrane  extracellular exosome  anion transmembrane transport  
Ontology : EGO-EBItransporter activity  plasma membrane  integral component of plasma membrane  transport  sodium ion transport  dicarboxylic acid transport  low-affinity sodium:dicarboxylate symporter activity  membrane  extracellular exosome  anion transmembrane transport  
NDEx NetworkSLC13A2
Atlas of Cancer Signalling NetworkSLC13A2
Wikipedia pathwaysSLC13A2
Orthology - Evolution
OrthoDB9058
Phylogenetic Trees/Animal Genes : TreeFamSLC13A2
HOVERGENQ13183
HOGENOMQ13183
Homologs : HomoloGeneSLC13A2
Homology/Alignments : Family Browser (UCSC)SLC13A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC13A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC13A2
dbVarSLC13A2
ClinVarSLC13A2
1000_GenomesSLC13A2 
Exome Variant ServerSLC13A2
ExAC (Exome Aggregation Consortium)SLC13A2 (select the gene name)
Genetic variants : HAPMAP9058
Genomic Variants (DGV)SLC13A2 [DGVbeta]
DECIPHERSLC13A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC13A2 
Mutations
ICGC Data PortalSLC13A2 
TCGA Data PortalSLC13A2 
Broad Tumor PortalSLC13A2
OASIS PortalSLC13A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC13A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC13A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC13A2
DgiDB (Drug Gene Interaction Database)SLC13A2
DoCM (Curated mutations)SLC13A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC13A2 (select a term)
intoGenSLC13A2
Cancer3DSLC13A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604148   
Orphanet
MedgenSLC13A2
Genetic Testing Registry SLC13A2
NextProtQ13183 [Medical]
TSGene9058
GENETestsSLC13A2
Target ValidationSLC13A2
Huge Navigator SLC13A2 [HugePedia]
snp3D : Map Gene to Disease9058
BioCentury BCIQSLC13A2
ClinGenSLC13A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9058
Chemical/Pharm GKB GenePA382
Clinical trialSLC13A2
Miscellaneous
canSAR (ICR)SLC13A2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC13A2
EVEXSLC13A2
GoPubMedSLC13A2
iHOPSLC13A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:07:26 CEST 2017

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