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SLC13A3 (solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3)

Identity

Alias_namessolute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
Alias_symbol (synonym)NADC3
SDCT2
Other alias
HGNC (Hugo) SLC13A3
LocusID (NCBI) 64849
Atlas_Id 73279
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45186462 and ends at 45313124 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MPHOSPH10 (2p13.3) / SLC13A3 (20q13.12)SLC13A3 (20q13.12) / MPHOSPH10 (2p13.3)TP53RK (20q13.12) / SLC13A3 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC13A3   14430
Cards
Entrez_Gene (NCBI)SLC13A3  64849  solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
AliasesNADC3; SDCT2
GeneCards (Weizmann)SLC13A3
Ensembl hg19 (Hinxton)ENSG00000158296 [Gene_View]  chr20:45186462-45313124 [Contig_View]  SLC13A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000158296 [Gene_View]  chr20:45186462-45313124 [Contig_View]  SLC13A3 [Vega]
ICGC DataPortalENSG00000158296
TCGA cBioPortalSLC13A3
AceView (NCBI)SLC13A3
Genatlas (Paris)SLC13A3
WikiGenes64849
SOURCE (Princeton)SLC13A3
Genetics Home Reference (NIH)SLC13A3
Genomic and cartography
GoldenPath hg19 (UCSC)SLC13A3  -     chr20:45186462-45313124 -  20q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC13A3  -     20q13.12   [Description]    (hg38-Dec_2013)
EnsemblSLC13A3 - 20q13.12 [CytoView hg19]  SLC13A3 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBISLC13A3 [Mapview hg19]  SLC13A3 [Mapview hg38]
OMIM606411   
Gene and transcription
Genbank (Entrez)AF154121 AK023307 AK056713 AK096658 AK123351
RefSeq transcript (Entrez)NM_001011554 NM_001193339 NM_001193340 NM_001193342 NM_022829
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)SLC13A3
Cluster EST : UnigeneHs.670365 [ NCBI ]
CGAP (NCI)Hs.670365
Alternative Splicing GalleryENSG00000158296
Gene ExpressionSLC13A3 [ NCBI-GEO ]   SLC13A3 [ EBI - ARRAY_EXPRESS ]   SLC13A3 [ SEEK ]   SLC13A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC13A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64849
GTEX Portal (Tissue expression)SLC13A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWT9
Splice isoforms : SwissVarQ8WWT9
PhosPhoSitePlusQ8WWT9
Domains : Interpro (EBI)Na/sul_symport   
Domain families : Pfam (Sanger)Na_sulph_symp (PF00939)   
Domain families : Pfam (NCBI)pfam00939   
Conserved Domain (NCBI)SLC13A3
DMDM Disease mutations64849
Blocks (Seattle)SLC13A3
SuperfamilyQ8WWT9
Human Protein AtlasENSG00000158296
Peptide AtlasQ8WWT9
HPRD10450
IPIIPI00103426   IPI00219247   IPI00747380   IPI00940566   IPI00910660   IPI00552487   IPI00946484   IPI01011244   IPI00336096   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWT9
IntAct (EBI)Q8WWT9
FunCoupENSG00000158296
BioGRIDSLC13A3
STRING (EMBL)SLC13A3
ZODIACSLC13A3
Ontologies - Pathways
QuickGOQ8WWT9
Ontology : AmiGOplasma membrane  sodium ion transport  dicarboxylic acid transport  high-affinity sodium:dicarboxylate symporter activity  integral component of membrane  transmembrane transport  extracellular exosome  
Ontology : EGO-EBIplasma membrane  sodium ion transport  dicarboxylic acid transport  high-affinity sodium:dicarboxylate symporter activity  integral component of membrane  transmembrane transport  extracellular exosome  
NDEx NetworkSLC13A3
Atlas of Cancer Signalling NetworkSLC13A3
Wikipedia pathwaysSLC13A3
Orthology - Evolution
OrthoDB64849
GeneTree (enSembl)ENSG00000158296
Phylogenetic Trees/Animal Genes : TreeFamSLC13A3
HOVERGENQ8WWT9
HOGENOMQ8WWT9
Homologs : HomoloGeneSLC13A3
Homology/Alignments : Family Browser (UCSC)SLC13A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC13A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC13A3
dbVarSLC13A3
ClinVarSLC13A3
1000_GenomesSLC13A3 
Exome Variant ServerSLC13A3
ExAC (Exome Aggregation Consortium)SLC13A3 (select the gene name)
Genetic variants : HAPMAP64849
Genomic Variants (DGV)SLC13A3 [DGVbeta]
DECIPHER (Syndromes)20:45186462-45313124  ENSG00000158296
CONAN: Copy Number AnalysisSLC13A3 
Mutations
ICGC Data PortalSLC13A3 
TCGA Data PortalSLC13A3 
Broad Tumor PortalSLC13A3
OASIS PortalSLC13A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC13A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC13A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC13A3
DgiDB (Drug Gene Interaction Database)SLC13A3
DoCM (Curated mutations)SLC13A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC13A3 (select a term)
intoGenSLC13A3
Cancer3DSLC13A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606411   
Orphanet
MedgenSLC13A3
Genetic Testing Registry SLC13A3
NextProtQ8WWT9 [Medical]
TSGene64849
GENETestsSLC13A3
Huge Navigator SLC13A3 [HugePedia]
snp3D : Map Gene to Disease64849
BioCentury BCIQSLC13A3
ClinGenSLC13A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64849
Chemical/Pharm GKB GenePA37881
Clinical trialSLC13A3
Miscellaneous
canSAR (ICR)SLC13A3 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC13A3
EVEXSLC13A3
GoPubMedSLC13A3
iHOPSLC13A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:17 CET 2017

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