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SLC13A4 (solute carrier family 13 member 4)

Identity

Alias_namessolute carrier family 13 (sodium/sulphate symporters), member 4
solute carrier family 13 (sodium/sulfate symporter), member 4
Alias_symbol (synonym)SUT-1
SUT1
Other aliasNAS2
HGNC (Hugo) SLC13A4
LocusID (NCBI) 26266
Atlas_Id 73280
Location 7q33  [Link to chromosome band 7q33]
Location_base_pair Starts at 135681239 and ends at 135728204 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC13A4 (7q33) / WDR46 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC13A4   15827
Cards
Entrez_Gene (NCBI)SLC13A4  26266  solute carrier family 13 member 4
AliasesNAS2; SUT-1; SUT1
GeneCards (Weizmann)SLC13A4
Ensembl hg19 (Hinxton)ENSG00000164707 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164707 [Gene_View]  chr7:135681239-135728204 [Contig_View]  SLC13A4 [Vega]
ICGC DataPortalENSG00000164707
TCGA cBioPortalSLC13A4
AceView (NCBI)SLC13A4
Genatlas (Paris)SLC13A4
WikiGenes26266
SOURCE (Princeton)SLC13A4
Genetics Home Reference (NIH)SLC13A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC13A4  -     chr7:135681239-135728204 -  7q33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC13A4  -     7q33   [Description]    (hg19-Feb_2009)
EnsemblSLC13A4 - 7q33 [CytoView hg19]  SLC13A4 - 7q33 [CytoView hg38]
Mapping of homologs : NCBISLC13A4 [Mapview hg19]  SLC13A4 [Mapview hg38]
OMIM604309   
Gene and transcription
Genbank (Entrez)AB208809 AF169301 AK313072 BC030689 DQ893558
RefSeq transcript (Entrez)NM_001318192 NM_012450
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC13A4
Cluster EST : UnigeneHs.490241 [ NCBI ]
CGAP (NCI)Hs.490241
Alternative Splicing GalleryENSG00000164707
Gene ExpressionSLC13A4 [ NCBI-GEO ]   SLC13A4 [ EBI - ARRAY_EXPRESS ]   SLC13A4 [ SEEK ]   SLC13A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC13A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26266
GTEX Portal (Tissue expression)SLC13A4
Human Protein AtlasENSG00000164707-SLC13A4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKG4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKG4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKG4
Splice isoforms : SwissVarQ9UKG4
PhosPhoSitePlusQ9UKG4
Domains : Interpro (EBI)Na/sul_symport   
Domain families : Pfam (Sanger)Na_sulph_symp (PF00939)   
Domain families : Pfam (NCBI)pfam00939   
Conserved Domain (NCBI)SLC13A4
DMDM Disease mutations26266
Blocks (Seattle)SLC13A4
SuperfamilyQ9UKG4
Human Protein Atlas [tissue]ENSG00000164707-SLC13A4 [tissue]
Peptide AtlasQ9UKG4
HPRD10372
IPIIPI00556011   IPI00915985   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKG4
IntAct (EBI)Q9UKG4
FunCoupENSG00000164707
BioGRIDSLC13A4
STRING (EMBL)SLC13A4
ZODIACSLC13A4
Ontologies - Pathways
QuickGOQ9UKG4
Ontology : AmiGOtransporter activity  plasma membrane  integral component of plasma membrane  sulfate transport  sodium:sulfate symporter activity  sodium ion transmembrane transport  anion transmembrane transport  
Ontology : EGO-EBItransporter activity  plasma membrane  integral component of plasma membrane  sulfate transport  sodium:sulfate symporter activity  sodium ion transmembrane transport  anion transmembrane transport  
NDEx NetworkSLC13A4
Atlas of Cancer Signalling NetworkSLC13A4
Wikipedia pathwaysSLC13A4
Orthology - Evolution
OrthoDB26266
GeneTree (enSembl)ENSG00000164707
Phylogenetic Trees/Animal Genes : TreeFamSLC13A4
HOVERGENQ9UKG4
HOGENOMQ9UKG4
Homologs : HomoloGeneSLC13A4
Homology/Alignments : Family Browser (UCSC)SLC13A4
Gene fusions - Rearrangements
Tumor Fusion PortalSLC13A4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC13A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC13A4
dbVarSLC13A4
ClinVarSLC13A4
1000_GenomesSLC13A4 
Exome Variant ServerSLC13A4
ExAC (Exome Aggregation Consortium)ENSG00000164707
GNOMAD BrowserENSG00000164707
Genetic variants : HAPMAP26266
Genomic Variants (DGV)SLC13A4 [DGVbeta]
DECIPHERSLC13A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC13A4 
Mutations
ICGC Data PortalSLC13A4 
TCGA Data PortalSLC13A4 
Broad Tumor PortalSLC13A4
OASIS PortalSLC13A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC13A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC13A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC13A4
DgiDB (Drug Gene Interaction Database)SLC13A4
DoCM (Curated mutations)SLC13A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC13A4 (select a term)
intoGenSLC13A4
Cancer3DSLC13A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604309   
Orphanet
DisGeNETSLC13A4
MedgenSLC13A4
Genetic Testing Registry SLC13A4
NextProtQ9UKG4 [Medical]
TSGene26266
GENETestsSLC13A4
Target ValidationSLC13A4
Huge Navigator SLC13A4 [HugePedia]
snp3D : Map Gene to Disease26266
BioCentury BCIQSLC13A4
ClinGenSLC13A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26266
Chemical/Pharm GKB GenePA38045
Clinical trialSLC13A4
Miscellaneous
canSAR (ICR)SLC13A4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC13A4
EVEXSLC13A4
GoPubMedSLC13A4
iHOPSLC13A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:17:09 CET 2017

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