Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC13A5 (solute carrier family 13 member 5)

Identity

Alias_namessolute carrier family 13 (sodium-dependent citrate transporter), member 5
Alias_symbol (synonym)NACT
Other aliasEIEE25
mIndy
HGNC (Hugo) SLC13A5
LocusID (NCBI) 284111
Atlas_Id 73281
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 6684713 and ends at 6713421 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC13A5   23089
LRG (Locus Reference Genomic)LRG_1020
Cards
Entrez_Gene (NCBI)SLC13A5  284111  solute carrier family 13 member 5
AliasesEIEE25; NACT; mIndy
GeneCards (Weizmann)SLC13A5
Ensembl hg19 (Hinxton)ENSG00000141485 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141485 [Gene_View]  chr17:6684713-6713421 [Contig_View]  SLC13A5 [Vega]
ICGC DataPortalENSG00000141485
TCGA cBioPortalSLC13A5
AceView (NCBI)SLC13A5
Genatlas (Paris)SLC13A5
WikiGenes284111
SOURCE (Princeton)SLC13A5
Genetics Home Reference (NIH)SLC13A5
Genomic and cartography
GoldenPath hg38 (UCSC)SLC13A5  -     chr17:6684713-6713421 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC13A5  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblSLC13A5 - 17p13.1 [CytoView hg19]  SLC13A5 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBISLC13A5 [Mapview hg19]  SLC13A5 [Mapview hg38]
OMIM608305   615905   
Gene and transcription
Genbank (Entrez)AJ489980 AK124317 AK127797 AK131206 AK172779
RefSeq transcript (Entrez)NM_001143838 NM_001284509 NM_001284510 NM_177550
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC13A5
Cluster EST : UnigeneHs.399496 [ NCBI ]
CGAP (NCI)Hs.399496
Alternative Splicing GalleryENSG00000141485
Gene ExpressionSLC13A5 [ NCBI-GEO ]   SLC13A5 [ EBI - ARRAY_EXPRESS ]   SLC13A5 [ SEEK ]   SLC13A5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC13A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284111
GTEX Portal (Tissue expression)SLC13A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YT5
Splice isoforms : SwissVarQ86YT5
PhosPhoSitePlusQ86YT5
Domaine pattern : Prosite (Expaxy)NA_SULFATE (PS01271)   
Domains : Interpro (EBI)Na/sul_symport    Na/sul_symport_CS   
Domain families : Pfam (Sanger)Na_sulph_symp (PF00939)   
Domain families : Pfam (NCBI)pfam00939   
Conserved Domain (NCBI)SLC13A5
DMDM Disease mutations284111
Blocks (Seattle)SLC13A5
SuperfamilyQ86YT5
Human Protein AtlasENSG00000141485
Peptide AtlasQ86YT5
HPRD10512
IPIIPI00329445   IPI01015969   IPI00238048   IPI00916961   
Protein Interaction databases
DIP (DOE-UCLA)Q86YT5
IntAct (EBI)Q86YT5
FunCoupENSG00000141485
BioGRIDSLC13A5
STRING (EMBL)SLC13A5
ZODIACSLC13A5
Ontologies - Pathways
QuickGOQ86YT5
Ontology : AmiGOplasma membrane  integral component of plasma membrane  sodium ion transport  citrate transmembrane transporter activity  citrate transmembrane transporter activity  succinate transmembrane transporter activity  citrate transport  sodium:dicarboxylate symporter activity  tricarboxylic acid transmembrane transport  succinate transmembrane transport  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  sodium ion transport  citrate transmembrane transporter activity  citrate transmembrane transporter activity  succinate transmembrane transporter activity  citrate transport  sodium:dicarboxylate symporter activity  tricarboxylic acid transmembrane transport  succinate transmembrane transport  
NDEx NetworkSLC13A5
Atlas of Cancer Signalling NetworkSLC13A5
Wikipedia pathwaysSLC13A5
Orthology - Evolution
OrthoDB284111
GeneTree (enSembl)ENSG00000141485
Phylogenetic Trees/Animal Genes : TreeFamSLC13A5
HOVERGENQ86YT5
HOGENOMQ86YT5
Homologs : HomoloGeneSLC13A5
Homology/Alignments : Family Browser (UCSC)SLC13A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC13A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC13A5
dbVarSLC13A5
ClinVarSLC13A5
1000_GenomesSLC13A5 
Exome Variant ServerSLC13A5
ExAC (Exome Aggregation Consortium)SLC13A5 (select the gene name)
Genetic variants : HAPMAP284111
Genomic Variants (DGV)SLC13A5 [DGVbeta]
DECIPHERSLC13A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC13A5 
Mutations
ICGC Data PortalSLC13A5 
TCGA Data PortalSLC13A5 
Broad Tumor PortalSLC13A5
OASIS PortalSLC13A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC13A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC13A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC13A5
DgiDB (Drug Gene Interaction Database)SLC13A5
DoCM (Curated mutations)SLC13A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC13A5 (select a term)
intoGenSLC13A5
Cancer3DSLC13A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608305    615905   
Orphanet23427   
MedgenSLC13A5
Genetic Testing Registry SLC13A5
NextProtQ86YT5 [Medical]
TSGene284111
GENETestsSLC13A5
Target ValidationSLC13A5
Huge Navigator SLC13A5 [HugePedia]
snp3D : Map Gene to Disease284111
BioCentury BCIQSLC13A5
ClinGenSLC13A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284111
Chemical/Pharm GKB GenePA134950956
Clinical trialSLC13A5
Miscellaneous
canSAR (ICR)SLC13A5 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC13A5
EVEXSLC13A5
GoPubMedSLC13A5
iHOPSLC13A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:53 CEST 2017

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