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SLC14A1 (solute carrier family 14 member 1 (Kidd blood group))

Identity

Alias_namesJK
Kidd blood group
solute carrier family 14 (urea transporter), member 1
solute carrier family 14 (urea transporter), member 1 (Kidd blood group)
Alias_symbol (synonym)HsT1341
RACH1
RACH2
Other aliasHUT11
UT-B1
UT1
UTE
HGNC (Hugo) SLC14A1
LocusID (NCBI) 6563
Atlas_Id 42310
Location 18q12.3  [Link to chromosome band 18q12]
Location_base_pair Starts at 45724127 and ends at 45752520 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC14A1   10918
LRG (Locus Reference Genomic)LRG_802
Cards
Entrez_Gene (NCBI)SLC14A1  6563  solute carrier family 14 member 1 (Kidd blood group)
AliasesHUT11; HsT1341; JK; RACH1; 
RACH2; UT-B1; UT1; UTE
GeneCards (Weizmann)SLC14A1
Ensembl hg19 (Hinxton)ENSG00000141469 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141469 [Gene_View]  chr18:45724127-45752520 [Contig_View]  SLC14A1 [Vega]
ICGC DataPortalENSG00000141469
TCGA cBioPortalSLC14A1
AceView (NCBI)SLC14A1
Genatlas (Paris)SLC14A1
WikiGenes6563
SOURCE (Princeton)SLC14A1
Genetics Home Reference (NIH)SLC14A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC14A1  -     chr18:45724127-45752520 +  18q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC14A1  -     18q12.3   [Description]    (hg19-Feb_2009)
EnsemblSLC14A1 - 18q12.3 [CytoView hg19]  SLC14A1 - 18q12.3 [CytoView hg38]
Mapping of homologs : NCBISLC14A1 [Mapview hg19]  SLC14A1 [Mapview hg38]
OMIM111000   613868   
Gene and transcription
Genbank (Entrez)AF263545 AF328892 AK091064 AK123681 AK127452
RefSeq transcript (Entrez)NM_001128588 NM_001146036 NM_001146037 NM_001308278 NM_001308279 NM_015865
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC14A1
Cluster EST : UnigeneHs.101307 [ NCBI ]
CGAP (NCI)Hs.101307
Alternative Splicing GalleryENSG00000141469
Gene ExpressionSLC14A1 [ NCBI-GEO ]   SLC14A1 [ EBI - ARRAY_EXPRESS ]   SLC14A1 [ SEEK ]   SLC14A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC14A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6563
GTEX Portal (Tissue expression)SLC14A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13336   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13336  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13336
Splice isoforms : SwissVarQ13336
PhosPhoSitePlusQ13336
Domains : Interpro (EBI)Ammonium/urea_transptr    Urea_transporter   
Domain families : Pfam (Sanger)UT (PF03253)   
Domain families : Pfam (NCBI)pfam03253   
Conserved Domain (NCBI)SLC14A1
DMDM Disease mutations6563
Blocks (Seattle)SLC14A1
SuperfamilyQ13336
Human Protein AtlasENSG00000141469
Peptide AtlasQ13336
HPRD00195
IPIIPI00298337   IPI00646873   IPI00639830   IPI01009223   IPI00646405   
Protein Interaction databases
DIP (DOE-UCLA)Q13336
IntAct (EBI)Q13336
FunCoupENSG00000141469
BioGRIDSLC14A1
STRING (EMBL)SLC14A1
ZODIACSLC14A1
Ontologies - Pathways
QuickGOQ13336
Ontology : AmiGOwater transmembrane transporter activity  nucleolus  plasma membrane  integral component of plasma membrane  water transport  urea transmembrane transporter activity  urea channel activity  urea transport  basolateral plasma membrane  intracellular membrane-bounded organelle  transmembrane transport  urea transmembrane transport  
Ontology : EGO-EBIwater transmembrane transporter activity  nucleolus  plasma membrane  integral component of plasma membrane  water transport  urea transmembrane transporter activity  urea channel activity  urea transport  basolateral plasma membrane  intracellular membrane-bounded organelle  transmembrane transport  urea transmembrane transport  
NDEx NetworkSLC14A1
Atlas of Cancer Signalling NetworkSLC14A1
Wikipedia pathwaysSLC14A1
Orthology - Evolution
OrthoDB6563
GeneTree (enSembl)ENSG00000141469
Phylogenetic Trees/Animal Genes : TreeFamSLC14A1
HOVERGENQ13336
HOGENOMQ13336
Homologs : HomoloGeneSLC14A1
Homology/Alignments : Family Browser (UCSC)SLC14A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC14A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC14A1
dbVarSLC14A1
ClinVarSLC14A1
1000_GenomesSLC14A1 
Exome Variant ServerSLC14A1
ExAC (Exome Aggregation Consortium)SLC14A1 (select the gene name)
Genetic variants : HAPMAP6563
Genomic Variants (DGV)SLC14A1 [DGVbeta]
DECIPHERSLC14A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC14A1 
Mutations
ICGC Data PortalSLC14A1 
TCGA Data PortalSLC14A1 
Broad Tumor PortalSLC14A1
OASIS PortalSLC14A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC14A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC14A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC14A1
DgiDB (Drug Gene Interaction Database)SLC14A1
DoCM (Curated mutations)SLC14A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC14A1 (select a term)
intoGenSLC14A1
Cancer3DSLC14A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM111000    613868   
Orphanet
MedgenSLC14A1
Genetic Testing Registry SLC14A1
NextProtQ13336 [Medical]
TSGene6563
GENETestsSLC14A1
Huge Navigator SLC14A1 [HugePedia]
snp3D : Map Gene to Disease6563
BioCentury BCIQSLC14A1
ClinGenSLC14A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6563
Chemical/Pharm GKB GenePA35810
Clinical trialSLC14A1
Miscellaneous
canSAR (ICR)SLC14A1 (select the gene name)
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC14A1
EVEXSLC14A1
GoPubMedSLC14A1
iHOPSLC14A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:37:24 CEST 2017

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