Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SLC14A2 (solute carrier family 14 member 2)

Identity

Alias_namessolute carrier family 14 (urea transporter)
Alias_symbol (synonym)HUT2
UT2
Other aliasUT-A2
UTA
UTR
hUT-A6
HGNC (Hugo) SLC14A2
LocusID (NCBI) 8170
Atlas_Id 55875
Location 18q12.3  [Link to chromosome band 18q12]
Location_base_pair Starts at 42792947 and ends at 43263060 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACSBG2 (19p13.3) / SLC14A2 (18q12.3)DYM (18q21.1) / SLC14A2 (18q12.3)SLC14A2 (18q12.3) / ANXA6 (5q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC14A2   10919
Cards
Entrez_Gene (NCBI)SLC14A2  8170  solute carrier family 14 member 2
AliasesHUT2; UT-A2; UT2; UTA; 
UTR; hUT-A6
GeneCards (Weizmann)SLC14A2
Ensembl hg19 (Hinxton)ENSG00000132874 [Gene_View]  chr18:42792947-43263060 [Contig_View]  SLC14A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132874 [Gene_View]  chr18:42792947-43263060 [Contig_View]  SLC14A2 [Vega]
ICGC DataPortalENSG00000132874
TCGA cBioPortalSLC14A2
AceView (NCBI)SLC14A2
Genatlas (Paris)SLC14A2
WikiGenes8170
SOURCE (Princeton)SLC14A2
Genetics Home Reference (NIH)SLC14A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC14A2  -     chr18:42792947-43263060 +  18q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC14A2  -     18q12.3   [Description]    (hg38-Dec_2013)
EnsemblSLC14A2 - 18q12.3 [CytoView hg19]  SLC14A2 - 18q12.3 [CytoView hg38]
Mapping of homologs : NCBISLC14A2 [Mapview hg19]  SLC14A2 [Mapview hg38]
OMIM601611   
Gene and transcription
Genbank (Entrez)AF349446 AK074236 AK122698 AK292422 BC110445
RefSeq transcript (Entrez)NM_001242692 NM_007163
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC14A2
Cluster EST : UnigeneHs.710927 [ NCBI ]
CGAP (NCI)Hs.710927
Alternative Splicing GalleryENSG00000132874
Gene ExpressionSLC14A2 [ NCBI-GEO ]   SLC14A2 [ EBI - ARRAY_EXPRESS ]   SLC14A2 [ SEEK ]   SLC14A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC14A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8170
GTEX Portal (Tissue expression)SLC14A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15849   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15849  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15849
Splice isoforms : SwissVarQ15849
PhosPhoSitePlusQ15849
Domains : Interpro (EBI)Ammonium/urea_transptr    Urea_transporter   
Domain families : Pfam (Sanger)UT (PF03253)   
Domain families : Pfam (NCBI)pfam03253   
Conserved Domain (NCBI)SLC14A2
DMDM Disease mutations8170
Blocks (Seattle)SLC14A2
SuperfamilyQ15849
Human Protein AtlasENSG00000132874
Peptide AtlasQ15849
HPRD03366
IPIIPI00177820   IPI00885172   IPI00291690   
Protein Interaction databases
DIP (DOE-UCLA)Q15849
IntAct (EBI)Q15849
FunCoupENSG00000132874
BioGRIDSLC14A2
STRING (EMBL)SLC14A2
ZODIACSLC14A2
Ontologies - Pathways
QuickGOQ15849
Ontology : AmiGOplasma membrane  integral component of plasma membrane  response to water deprivation  urea transmembrane transporter activity  urea channel activity  urea transport  membrane  integral component of membrane  apical plasma membrane  cell adhesion molecule binding  transmembrane transport  urea transmembrane transport  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  response to water deprivation  urea transmembrane transporter activity  urea channel activity  urea transport  membrane  integral component of membrane  apical plasma membrane  cell adhesion molecule binding  transmembrane transport  urea transmembrane transport  
NDEx NetworkSLC14A2
Atlas of Cancer Signalling NetworkSLC14A2
Wikipedia pathwaysSLC14A2
Orthology - Evolution
OrthoDB8170
GeneTree (enSembl)ENSG00000132874
Phylogenetic Trees/Animal Genes : TreeFamSLC14A2
HOVERGENQ15849
HOGENOMQ15849
Homologs : HomoloGeneSLC14A2
Homology/Alignments : Family Browser (UCSC)SLC14A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC14A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC14A2
dbVarSLC14A2
ClinVarSLC14A2
1000_GenomesSLC14A2 
Exome Variant ServerSLC14A2
ExAC (Exome Aggregation Consortium)SLC14A2 (select the gene name)
Genetic variants : HAPMAP8170
Genomic Variants (DGV)SLC14A2 [DGVbeta]
DECIPHER (Syndromes)18:42792947-43263060  ENSG00000132874
CONAN: Copy Number AnalysisSLC14A2 
Mutations
ICGC Data PortalSLC14A2 
TCGA Data PortalSLC14A2 
Broad Tumor PortalSLC14A2
OASIS PortalSLC14A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC14A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC14A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC14A2
DgiDB (Drug Gene Interaction Database)SLC14A2
DoCM (Curated mutations)SLC14A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC14A2 (select a term)
intoGenSLC14A2
Cancer3DSLC14A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601611   
Orphanet
MedgenSLC14A2
Genetic Testing Registry SLC14A2
NextProtQ15849 [Medical]
TSGene8170
GENETestsSLC14A2
Huge Navigator SLC14A2 [HugePedia]
snp3D : Map Gene to Disease8170
BioCentury BCIQSLC14A2
ClinGenSLC14A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8170
Chemical/Pharm GKB GenePA35811
Clinical trialSLC14A2
Miscellaneous
canSAR (ICR)SLC14A2 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC14A2
EVEXSLC14A2
GoPubMedSLC14A2
iHOPSLC14A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:19:29 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.