Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC15A1 (solute carrier family 15 member 1)

Identity

Alias_namessolute carrier family 15 (oligopeptide transporter)
Alias_symbol (synonym)PEPT1
HPECT1
HPEPT1
Other alias
HGNC (Hugo) SLC15A1
LocusID (NCBI) 6564
Atlas_Id 46274
Location 13q32.3  [Link to chromosome band 13q32]
Location_base_pair Starts at 99336055 and ends at 99404929 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC15A1   10920
Cards
Entrez_Gene (NCBI)SLC15A1  6564  solute carrier family 15 member 1
AliasesHPECT1; HPEPT1; PEPT1
GeneCards (Weizmann)SLC15A1
Ensembl hg19 (Hinxton)ENSG00000088386 [Gene_View]  chr13:99336055-99404929 [Contig_View]  SLC15A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000088386 [Gene_View]  chr13:99336055-99404929 [Contig_View]  SLC15A1 [Vega]
ICGC DataPortalENSG00000088386
TCGA cBioPortalSLC15A1
AceView (NCBI)SLC15A1
Genatlas (Paris)SLC15A1
WikiGenes6564
SOURCE (Princeton)SLC15A1
Genetics Home Reference (NIH)SLC15A1
Genomic and cartography
GoldenPath hg19 (UCSC)SLC15A1  -     chr13:99336055-99404929 -  13q32.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC15A1  -     13q32.3   [Description]    (hg38-Dec_2013)
EnsemblSLC15A1 - 13q32.3 [CytoView hg19]  SLC15A1 - 13q32.3 [CytoView hg38]
Mapping of homologs : NCBISLC15A1 [Mapview hg19]  SLC15A1 [Mapview hg38]
OMIM600544   
Gene and transcription
Genbank (Entrez)AB001328 AF043233 AL708816 AW449979 AY634368
RefSeq transcript (Entrez)NM_005073
RefSeq genomic (Entrez)NC_000013 NC_018924 NG_017032 NT_009952 NW_004929389
Consensus coding sequences : CCDS (NCBI)SLC15A1
Cluster EST : UnigeneHs.436893 [ NCBI ]
CGAP (NCI)Hs.436893
Alternative Splicing GalleryENSG00000088386
Gene ExpressionSLC15A1 [ NCBI-GEO ]   SLC15A1 [ EBI - ARRAY_EXPRESS ]   SLC15A1 [ SEEK ]   SLC15A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC15A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6564
GTEX Portal (Tissue expression)SLC15A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46059   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP46059  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP46059
Splice isoforms : SwissVarP46059
PhosPhoSitePlusP46059
Domaine pattern : Prosite (Expaxy)PTR2_1 (PS01022)    PTR2_2 (PS01023)   
Domains : Interpro (EBI)MFS_dom    Oligopep_transport    POT_fam    PTR2_symporter_CS   
Domain families : Pfam (Sanger)PTR2 (PF00854)   
Domain families : Pfam (NCBI)pfam00854   
Conserved Domain (NCBI)SLC15A1
DMDM Disease mutations6564
Blocks (Seattle)SLC15A1
SuperfamilyP46059
Human Protein AtlasENSG00000088386
Peptide AtlasP46059
HPRD02768
IPIIPI00004279   IPI00844114   IPI00387131   
Protein Interaction databases
DIP (DOE-UCLA)P46059
IntAct (EBI)P46059
FunCoupENSG00000088386
BioGRIDSLC15A1
STRING (EMBL)SLC15A1
ZODIACSLC15A1
Ontologies - Pathways
QuickGOP46059
Ontology : AmiGOproton-dependent oligopeptide secondary active transmembrane transporter activity  plasma membrane  integral component of plasma membrane  brush border  transport  ion transport  digestion  protein transport  peptide:proton symporter activity  proton transport  membrane  oligopeptide transmembrane transport  
Ontology : EGO-EBIproton-dependent oligopeptide secondary active transmembrane transporter activity  plasma membrane  integral component of plasma membrane  brush border  transport  ion transport  digestion  protein transport  peptide:proton symporter activity  proton transport  membrane  oligopeptide transmembrane transport  
Pathways : KEGGProtein digestion and absorption   
NDEx NetworkSLC15A1
Atlas of Cancer Signalling NetworkSLC15A1
Wikipedia pathwaysSLC15A1
Orthology - Evolution
OrthoDB6564
GeneTree (enSembl)ENSG00000088386
Phylogenetic Trees/Animal Genes : TreeFamSLC15A1
HOVERGENP46059
HOGENOMP46059
Homologs : HomoloGeneSLC15A1
Homology/Alignments : Family Browser (UCSC)SLC15A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC15A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC15A1
dbVarSLC15A1
ClinVarSLC15A1
1000_GenomesSLC15A1 
Exome Variant ServerSLC15A1
ExAC (Exome Aggregation Consortium)SLC15A1 (select the gene name)
Genetic variants : HAPMAP6564
Genomic Variants (DGV)SLC15A1 [DGVbeta]
DECIPHER (Syndromes)13:99336055-99404929  ENSG00000088386
CONAN: Copy Number AnalysisSLC15A1 
Mutations
ICGC Data PortalSLC15A1 
TCGA Data PortalSLC15A1 
Broad Tumor PortalSLC15A1
OASIS PortalSLC15A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC15A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC15A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC15A1
DgiDB (Drug Gene Interaction Database)SLC15A1
DoCM (Curated mutations)SLC15A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC15A1 (select a term)
intoGenSLC15A1
Cancer3DSLC15A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600544   
Orphanet
MedgenSLC15A1
Genetic Testing Registry SLC15A1
NextProtP46059 [Medical]
TSGene6564
GENETestsSLC15A1
Huge Navigator SLC15A1 [HugePedia]
snp3D : Map Gene to Disease6564
BioCentury BCIQSLC15A1
ClinGenSLC15A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6564
Chemical/Pharm GKB GenePA323
Clinical trialSLC15A1
Miscellaneous
canSAR (ICR)SLC15A1 (select the gene name)
Probes
Litterature
PubMed78 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC15A1
EVEXSLC15A1
GoPubMedSLC15A1
iHOPSLC15A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:27:30 CET 2017

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