Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC15A2 (solute carrier family 15 (oligopeptide transporter), member 2)

Identity

Alias_namessolute carrier family 15 (H+/peptide transporter), member 2
solute carrier family 15 (oligopeptide transporter), member 2
Alias_symbol (synonym)PEPT2
Other alias
HGNC (Hugo) SLC15A2
LocusID (NCBI) 6565
Atlas_Id 73284
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 121613171 and ends at 121663034 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC15A2   10921
Cards
Entrez_Gene (NCBI)SLC15A2  6565  solute carrier family 15 (oligopeptide transporter), member 2
AliasesPEPT2
GeneCards (Weizmann)SLC15A2
Ensembl hg19 (Hinxton)ENSG00000163406 [Gene_View]  chr3:121613171-121663034 [Contig_View]  SLC15A2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163406 [Gene_View]  chr3:121613171-121663034 [Contig_View]  SLC15A2 [Vega]
ICGC DataPortalENSG00000163406
TCGA cBioPortalSLC15A2
AceView (NCBI)SLC15A2
Genatlas (Paris)SLC15A2
WikiGenes6565
SOURCE (Princeton)SLC15A2
Genetics Home Reference (NIH)SLC15A2
Genomic and cartography
GoldenPath hg19 (UCSC)SLC15A2  -     chr3:121613171-121663034 +  3q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC15A2  -     3q13.33   [Description]    (hg38-Dec_2013)
EnsemblSLC15A2 - 3q13.33 [CytoView hg19]  SLC15A2 - 3q13.33 [CytoView hg38]
Mapping of homologs : NCBISLC15A2 [Mapview hg19]  SLC15A2 [Mapview hg38]
OMIM602339   
Gene and transcription
Genbank (Entrez)AK090726 AK289820 AK296895 AK302002 AK304189
RefSeq transcript (Entrez)NM_001145998 NM_021082
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)SLC15A2
Cluster EST : UnigeneHs.518089 [ NCBI ]
CGAP (NCI)Hs.518089
Alternative Splicing GalleryENSG00000163406
Gene ExpressionSLC15A2 [ NCBI-GEO ]   SLC15A2 [ EBI - ARRAY_EXPRESS ]   SLC15A2 [ SEEK ]   SLC15A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC15A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6565
GTEX Portal (Tissue expression)SLC15A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16348   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16348  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16348
Splice isoforms : SwissVarQ16348
PhosPhoSitePlusQ16348
Domaine pattern : Prosite (Expaxy)PTR2_1 (PS01022)    PTR2_2 (PS01023)   
Domains : Interpro (EBI)Alpha/beta_knot_MTases    MFS_dom    Oligopep_transport    POT_fam    PTR2_symporter_CS   
Domain families : Pfam (Sanger)PTR2 (PF00854)   
Domain families : Pfam (NCBI)pfam00854   
Conserved Domain (NCBI)SLC15A2
DMDM Disease mutations6565
Blocks (Seattle)SLC15A2
SuperfamilyQ16348
Human Protein AtlasENSG00000163406
Peptide AtlasQ16348
HPRD09088
IPIIPI00328719   IPI00795557   IPI01015644   IPI00945645   IPI00945840   
Protein Interaction databases
DIP (DOE-UCLA)Q16348
IntAct (EBI)Q16348
FunCoupENSG00000163406
BioGRIDSLC15A2
STRING (EMBL)SLC15A2
ZODIACSLC15A2
Ontologies - Pathways
QuickGOQ16348
Ontology : AmiGOprotein binding  plasma membrane  integral component of plasma membrane  transport  ion transport  protein transport  peptide:proton symporter activity  high-affinity oligopeptide transporter activity  drug transport  proton transport  antibiotic transport  antibiotic transporter activity  dipeptide transporter activity  dipeptide transport  transmembrane transport  extracellular exosome  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of plasma membrane  transport  ion transport  protein transport  peptide:proton symporter activity  high-affinity oligopeptide transporter activity  drug transport  proton transport  antibiotic transport  antibiotic transporter activity  dipeptide transporter activity  dipeptide transport  transmembrane transport  extracellular exosome  
NDEx NetworkSLC15A2
Atlas of Cancer Signalling NetworkSLC15A2
Wikipedia pathwaysSLC15A2
Orthology - Evolution
OrthoDB6565
GeneTree (enSembl)ENSG00000163406
Phylogenetic Trees/Animal Genes : TreeFamSLC15A2
HOVERGENQ16348
HOGENOMQ16348
Homologs : HomoloGeneSLC15A2
Homology/Alignments : Family Browser (UCSC)SLC15A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC15A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC15A2
dbVarSLC15A2
ClinVarSLC15A2
1000_GenomesSLC15A2 
Exome Variant ServerSLC15A2
ExAC (Exome Aggregation Consortium)SLC15A2 (select the gene name)
Genetic variants : HAPMAP6565
Genomic Variants (DGV)SLC15A2 [DGVbeta]
DECIPHER (Syndromes)3:121613171-121663034  ENSG00000163406
CONAN: Copy Number AnalysisSLC15A2 
Mutations
ICGC Data PortalSLC15A2 
TCGA Data PortalSLC15A2 
Broad Tumor PortalSLC15A2
OASIS PortalSLC15A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC15A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC15A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC15A2
DgiDB (Drug Gene Interaction Database)SLC15A2
DoCM (Curated mutations)SLC15A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC15A2 (select a term)
intoGenSLC15A2
Cancer3DSLC15A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602339   
Orphanet
MedgenSLC15A2
Genetic Testing Registry SLC15A2
NextProtQ16348 [Medical]
TSGene6565
GENETestsSLC15A2
Huge Navigator SLC15A2 [HugePedia]
snp3D : Map Gene to Disease6565
BioCentury BCIQSLC15A2
ClinGenSLC15A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6565
Chemical/Pharm GKB GenePA35812
Clinical trialSLC15A2
Miscellaneous
canSAR (ICR)SLC15A2 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC15A2
EVEXSLC15A2
GoPubMedSLC15A2
iHOPSLC15A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:18 CET 2017

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