Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC15A3 (solute carrier family 15 (oligopeptide transporter), member 3)

Identity

Alias_namessolute carrier family 15, member 3
solute carrier family 15 (oligopeptide transporter), member 3
Alias_symbol (synonym)PHT2
hPTR3
Other aliasOCTP
PTR3
HGNC (Hugo) SLC15A3
LocusID (NCBI) 51296
Atlas_Id 73285
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60704555 and ends at 60719257 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC15A3   18068
Cards
Entrez_Gene (NCBI)SLC15A3  51296  solute carrier family 15 (oligopeptide transporter), member 3
AliasesOCTP; PHT2; PTR3
GeneCards (Weizmann)SLC15A3
Ensembl hg19 (Hinxton)ENSG00000110446 [Gene_View]  chr11:60704555-60719257 [Contig_View]  SLC15A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000110446 [Gene_View]  chr11:60704555-60719257 [Contig_View]  SLC15A3 [Vega]
ICGC DataPortalENSG00000110446
TCGA cBioPortalSLC15A3
AceView (NCBI)SLC15A3
Genatlas (Paris)SLC15A3
WikiGenes51296
SOURCE (Princeton)SLC15A3
Genetics Home Reference (NIH)SLC15A3
Genomic and cartography
GoldenPath hg19 (UCSC)SLC15A3  -     chr11:60704555-60719257 -  11q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC15A3  -     11q12.2   [Description]    (hg38-Dec_2013)
EnsemblSLC15A3 - 11q12.2 [CytoView hg19]  SLC15A3 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBISLC15A3 [Mapview hg19]  SLC15A3 [Mapview hg38]
OMIM610408   
Gene and transcription
Genbank (Entrez)AB020598 AF135600 AK127216 BC025710 BC037974
RefSeq transcript (Entrez)NM_016582
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)SLC15A3
Cluster EST : UnigeneHs.237856 [ NCBI ]
CGAP (NCI)Hs.237856
Alternative Splicing GalleryENSG00000110446
Gene ExpressionSLC15A3 [ NCBI-GEO ]   SLC15A3 [ EBI - ARRAY_EXPRESS ]   SLC15A3 [ SEEK ]   SLC15A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC15A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51296
GTEX Portal (Tissue expression)SLC15A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY34   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY34  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY34
Splice isoforms : SwissVarQ8IY34
PhosPhoSitePlusQ8IY34
Domains : Interpro (EBI)MFS_dom    POT_fam   
Domain families : Pfam (Sanger)PTR2 (PF00854)   
Domain families : Pfam (NCBI)pfam00854   
Conserved Domain (NCBI)SLC15A3
DMDM Disease mutations51296
Blocks (Seattle)SLC15A3
SuperfamilyQ8IY34
Human Protein AtlasENSG00000110446
Peptide AtlasQ8IY34
HPRD11565
IPIIPI00009855   IPI00807372   IPI01013235   IPI01014033   IPI01013694   IPI01011439   IPI01010892   
Protein Interaction databases
DIP (DOE-UCLA)Q8IY34
IntAct (EBI)Q8IY34
FunCoupENSG00000110446
BioGRIDSLC15A3
STRING (EMBL)SLC15A3
ZODIACSLC15A3
Ontologies - Pathways
QuickGOQ8IY34
Ontology : AmiGOlysosomal membrane  lysosomal membrane  ion transport  protein transport  symporter activity  peptide transport  integral component of membrane  intracellular membrane-bounded organelle  transmembrane transport  
Ontology : EGO-EBIlysosomal membrane  lysosomal membrane  ion transport  protein transport  symporter activity  peptide transport  integral component of membrane  intracellular membrane-bounded organelle  transmembrane transport  
NDEx NetworkSLC15A3
Atlas of Cancer Signalling NetworkSLC15A3
Wikipedia pathwaysSLC15A3
Orthology - Evolution
OrthoDB51296
GeneTree (enSembl)ENSG00000110446
Phylogenetic Trees/Animal Genes : TreeFamSLC15A3
HOVERGENQ8IY34
HOGENOMQ8IY34
Homologs : HomoloGeneSLC15A3
Homology/Alignments : Family Browser (UCSC)SLC15A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC15A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC15A3
dbVarSLC15A3
ClinVarSLC15A3
1000_GenomesSLC15A3 
Exome Variant ServerSLC15A3
ExAC (Exome Aggregation Consortium)SLC15A3 (select the gene name)
Genetic variants : HAPMAP51296
Genomic Variants (DGV)SLC15A3 [DGVbeta]
DECIPHER (Syndromes)11:60704555-60719257  ENSG00000110446
CONAN: Copy Number AnalysisSLC15A3 
Mutations
ICGC Data PortalSLC15A3 
TCGA Data PortalSLC15A3 
Broad Tumor PortalSLC15A3
OASIS PortalSLC15A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC15A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC15A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC15A3
DgiDB (Drug Gene Interaction Database)SLC15A3
DoCM (Curated mutations)SLC15A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC15A3 (select a term)
intoGenSLC15A3
Cancer3DSLC15A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610408   
Orphanet
MedgenSLC15A3
Genetic Testing Registry SLC15A3
NextProtQ8IY34 [Medical]
TSGene51296
GENETestsSLC15A3
Huge Navigator SLC15A3 [HugePedia]
snp3D : Map Gene to Disease51296
BioCentury BCIQSLC15A3
ClinGenSLC15A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51296
Chemical/Pharm GKB GenePA134919658
Clinical trialSLC15A3
Miscellaneous
canSAR (ICR)SLC15A3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC15A3
EVEXSLC15A3
GoPubMedSLC15A3
iHOPSLC15A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:18 CET 2017

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