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SLC15A4 (solute carrier family 15 member 4)

Identity

Alias_namessolute carrier family 15, member 4
solute carrier family 15 (oligopeptide transporter), member 4
Alias_symbol (synonym)PHT1
PTR4
Other aliasFP12591
HGNC (Hugo) SLC15A4
LocusID (NCBI) 121260
Atlas_Id 73286
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 128793194 and ends at 128823996 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC15A4 (12q24.32) / ARID1A (1p36.11)SLC15A4 (12q24.32) / HERC2 (15q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC15A4   23090
Cards
Entrez_Gene (NCBI)SLC15A4  121260  solute carrier family 15 member 4
AliasesFP12591; PHT1; PTR4
GeneCards (Weizmann)SLC15A4
Ensembl hg19 (Hinxton)ENSG00000139370 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139370 [Gene_View]  chr12:128793194-128823996 [Contig_View]  SLC15A4 [Vega]
ICGC DataPortalENSG00000139370
TCGA cBioPortalSLC15A4
AceView (NCBI)SLC15A4
Genatlas (Paris)SLC15A4
WikiGenes121260
SOURCE (Princeton)SLC15A4
Genetics Home Reference (NIH)SLC15A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC15A4  -     chr12:128793194-128823996 -  12q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC15A4  -     12q24.33   [Description]    (hg19-Feb_2009)
EnsemblSLC15A4 - 12q24.33 [CytoView hg19]  SLC15A4 - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBISLC15A4 [Mapview hg19]  SLC15A4 [Mapview hg38]
OMIM615806   
Gene and transcription
Genbank (Entrez)AF461893 AK095717 AK097154 AY038999 AY050629
RefSeq transcript (Entrez)NM_145648
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC15A4
Cluster EST : UnigeneHs.507260 [ NCBI ]
CGAP (NCI)Hs.507260
Alternative Splicing GalleryENSG00000139370
Gene ExpressionSLC15A4 [ NCBI-GEO ]   SLC15A4 [ EBI - ARRAY_EXPRESS ]   SLC15A4 [ SEEK ]   SLC15A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC15A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)121260
GTEX Portal (Tissue expression)SLC15A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N697   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N697  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N697
Splice isoforms : SwissVarQ8N697
PhosPhoSitePlusQ8N697
Domaine pattern : Prosite (Expaxy)PTR2_2 (PS01023)   
Domains : Interpro (EBI)MFS_dom    POT_fam    PTR2_symporter_CS   
Domain families : Pfam (Sanger)PTR2 (PF00854)   
Domain families : Pfam (NCBI)pfam00854   
Conserved Domain (NCBI)SLC15A4
DMDM Disease mutations121260
Blocks (Seattle)SLC15A4
SuperfamilyQ8N697
Human Protein AtlasENSG00000139370
Peptide AtlasQ8N697
IPIIPI00465259   IPI00883723   IPI01013385   IPI01012916   IPI00434466   
Protein Interaction databases
DIP (DOE-UCLA)Q8N697
IntAct (EBI)Q8N697
FunCoupENSG00000139370
BioGRIDSLC15A4
STRING (EMBL)SLC15A4
ZODIACSLC15A4
Ontologies - Pathways
QuickGOQ8N697
Ontology : AmiGOlysosomal membrane  plasma membrane  ion transport  oligopeptide transport  protein transport  peptide:proton symporter activity  proton transport  integral component of membrane  specific granule membrane  neutrophil degranulation  transmembrane transport  
Ontology : EGO-EBIlysosomal membrane  plasma membrane  ion transport  oligopeptide transport  protein transport  peptide:proton symporter activity  proton transport  integral component of membrane  specific granule membrane  neutrophil degranulation  transmembrane transport  
NDEx NetworkSLC15A4
Atlas of Cancer Signalling NetworkSLC15A4
Wikipedia pathwaysSLC15A4
Orthology - Evolution
OrthoDB121260
GeneTree (enSembl)ENSG00000139370
Phylogenetic Trees/Animal Genes : TreeFamSLC15A4
HOVERGENQ8N697
HOGENOMQ8N697
Homologs : HomoloGeneSLC15A4
Homology/Alignments : Family Browser (UCSC)SLC15A4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC15A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC15A4
dbVarSLC15A4
ClinVarSLC15A4
1000_GenomesSLC15A4 
Exome Variant ServerSLC15A4
ExAC (Exome Aggregation Consortium)SLC15A4 (select the gene name)
Genetic variants : HAPMAP121260
Genomic Variants (DGV)SLC15A4 [DGVbeta]
DECIPHERSLC15A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC15A4 
Mutations
ICGC Data PortalSLC15A4 
TCGA Data PortalSLC15A4 
Broad Tumor PortalSLC15A4
OASIS PortalSLC15A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC15A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC15A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC15A4
DgiDB (Drug Gene Interaction Database)SLC15A4
DoCM (Curated mutations)SLC15A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC15A4 (select a term)
intoGenSLC15A4
Cancer3DSLC15A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615806   
Orphanet
MedgenSLC15A4
Genetic Testing Registry SLC15A4
NextProtQ8N697 [Medical]
TSGene121260
GENETestsSLC15A4
Huge Navigator SLC15A4 [HugePedia]
snp3D : Map Gene to Disease121260
BioCentury BCIQSLC15A4
ClinGenSLC15A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD121260
Chemical/Pharm GKB GenePA134928948
Clinical trialSLC15A4
Miscellaneous
canSAR (ICR)SLC15A4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC15A4
EVEXSLC15A4
GoPubMedSLC15A4
iHOPSLC15A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:53:11 CEST 2017

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