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SLC15A5 (solute carrier family 15 member 5)

Identity

Alias_namessolute carrier family 15, member 5
Other alias-
HGNC (Hugo) SLC15A5
LocusID (NCBI) 729025
Atlas_Id 73287
Location 12p12.3  [Link to chromosome band 12p12]
Location_base_pair Starts at 16188485 and ends at 16277685 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC15A5   33455
Cards
Entrez_Gene (NCBI)SLC15A5  729025  solute carrier family 15 member 5
Aliases
GeneCards (Weizmann)SLC15A5
Ensembl hg19 (Hinxton)ENSG00000188991 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188991 [Gene_View]  chr12:16188485-16277685 [Contig_View]  SLC15A5 [Vega]
ICGC DataPortalENSG00000188991
TCGA cBioPortalSLC15A5
AceView (NCBI)SLC15A5
Genatlas (Paris)SLC15A5
WikiGenes729025
SOURCE (Princeton)SLC15A5
Genetics Home Reference (NIH)SLC15A5
Genomic and cartography
GoldenPath hg38 (UCSC)SLC15A5  -     chr12:16188485-16277685 -  12p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC15A5  -     12p12.3   [Description]    (hg19-Feb_2009)
EnsemblSLC15A5 - 12p12.3 [CytoView hg19]  SLC15A5 - 12p12.3 [CytoView hg38]
Mapping of homologs : NCBISLC15A5 [Mapview hg19]  SLC15A5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001170798
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC15A5
Cluster EST : UnigeneHs.692712 [ NCBI ]
CGAP (NCI)Hs.692712
Alternative Splicing GalleryENSG00000188991
Gene ExpressionSLC15A5 [ NCBI-GEO ]   SLC15A5 [ EBI - ARRAY_EXPRESS ]   SLC15A5 [ SEEK ]   SLC15A5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC15A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729025
GTEX Portal (Tissue expression)SLC15A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NIM6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NIM6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NIM6
Splice isoforms : SwissVarA6NIM6
PhosPhoSitePlusA6NIM6
Domains : Interpro (EBI)MFS_dom    POT_fam   
Domain families : Pfam (Sanger)PTR2 (PF00854)   
Domain families : Pfam (NCBI)pfam00854   
Conserved Domain (NCBI)SLC15A5
DMDM Disease mutations729025
Blocks (Seattle)SLC15A5
SuperfamilyA6NIM6
Human Protein AtlasENSG00000188991
Peptide AtlasA6NIM6
IPIIPI00413216   
Protein Interaction databases
DIP (DOE-UCLA)A6NIM6
IntAct (EBI)A6NIM6
FunCoupENSG00000188991
BioGRIDSLC15A5
STRING (EMBL)SLC15A5
ZODIACSLC15A5
Ontologies - Pathways
QuickGOA6NIM6
Ontology : AmiGOprotein transport  symporter activity  integral component of membrane  transmembrane transport  
Ontology : EGO-EBIprotein transport  symporter activity  integral component of membrane  transmembrane transport  
NDEx NetworkSLC15A5
Atlas of Cancer Signalling NetworkSLC15A5
Wikipedia pathwaysSLC15A5
Orthology - Evolution
OrthoDB729025
GeneTree (enSembl)ENSG00000188991
Phylogenetic Trees/Animal Genes : TreeFamSLC15A5
HOVERGENA6NIM6
HOGENOMA6NIM6
Homologs : HomoloGeneSLC15A5
Homology/Alignments : Family Browser (UCSC)SLC15A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC15A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC15A5
dbVarSLC15A5
ClinVarSLC15A5
1000_GenomesSLC15A5 
Exome Variant ServerSLC15A5
ExAC (Exome Aggregation Consortium)SLC15A5 (select the gene name)
Genetic variants : HAPMAP729025
Genomic Variants (DGV)SLC15A5 [DGVbeta]
DECIPHERSLC15A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC15A5 
Mutations
ICGC Data PortalSLC15A5 
TCGA Data PortalSLC15A5 
Broad Tumor PortalSLC15A5
OASIS PortalSLC15A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC15A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC15A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC15A5
DgiDB (Drug Gene Interaction Database)SLC15A5
DoCM (Curated mutations)SLC15A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC15A5 (select a term)
intoGenSLC15A5
Cancer3DSLC15A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC15A5
Genetic Testing Registry SLC15A5
NextProtA6NIM6 [Medical]
TSGene729025
GENETestsSLC15A5
Huge Navigator SLC15A5 [HugePedia]
snp3D : Map Gene to Disease729025
BioCentury BCIQSLC15A5
ClinGenSLC15A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729025
Chemical/Pharm GKB GenePA164725785
Clinical trialSLC15A5
Miscellaneous
canSAR (ICR)SLC15A5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC15A5
EVEXSLC15A5
GoPubMedSLC15A5
iHOPSLC15A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:53:11 CEST 2017

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