Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC16A1-AS1 (SLC16A1 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) SLC16A1-AS1
LocusID (NCBI) 100506392
Atlas_Id 73294
Location 1p13.2  [Link to chromosome band 1p13]
Location_base_pair Starts at 112956415 and ends at 112964068 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC16A1-AS1   49445
Cards
Entrez_Gene (NCBI)SLC16A1-AS1  100506392  SLC16A1 antisense RNA 1
Aliases
GeneCards (Weizmann)SLC16A1-AS1
Ensembl hg19 (Hinxton)ENSG00000226419 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226419 [Gene_View]  chr1:112956415-112964068 [Contig_View]  SLC16A1-AS1 [Vega]
ICGC DataPortalENSG00000226419
TCGA cBioPortalSLC16A1-AS1
AceView (NCBI)SLC16A1-AS1
Genatlas (Paris)SLC16A1-AS1
WikiGenes100506392
SOURCE (Princeton)SLC16A1-AS1
Genetics Home Reference (NIH)SLC16A1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC16A1-AS1  -     chr1:112956415-112964068 +  1p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC16A1-AS1  -     1p13.2   [Description]    (hg19-Feb_2009)
EnsemblSLC16A1-AS1 - 1p13.2 [CytoView hg19]  SLC16A1-AS1 - 1p13.2 [CytoView hg38]
Mapping of homologs : NCBISLC16A1-AS1 [Mapview hg19]  SLC16A1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC009525 BC023568 BC047723 BC062295 BQ708590
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC16A1-AS1
Cluster EST : UnigeneHs.418285 [ NCBI ]
CGAP (NCI)Hs.418285
Alternative Splicing GalleryENSG00000226419
Gene ExpressionSLC16A1-AS1 [ NCBI-GEO ]   SLC16A1-AS1 [ EBI - ARRAY_EXPRESS ]   SLC16A1-AS1 [ SEEK ]   SLC16A1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC16A1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506392
GTEX Portal (Tissue expression)SLC16A1-AS1
Human Protein AtlasENSG00000226419-SLC16A1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SLC16A1-AS1
DMDM Disease mutations100506392
Blocks (Seattle)SLC16A1-AS1
Human Protein Atlas [tissue]ENSG00000226419-SLC16A1-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000226419
BioGRIDSLC16A1-AS1
STRING (EMBL)SLC16A1-AS1
ZODIACSLC16A1-AS1
Ontologies - Pathways
Huge Navigator SLC16A1-AS1 [HugePedia]
snp3D : Map Gene to Disease100506392
BioCentury BCIQSLC16A1-AS1
ClinGenSLC16A1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506392
Clinical trialSLC16A1-AS1
Miscellaneous
canSAR (ICR)SLC16A1-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC16A1-AS1
EVEXSLC16A1-AS1
GoPubMedSLC16A1-AS1
iHOPSLC16A1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:02:54 CET 2017

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