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SLC16A11 (solute carrier family 16, member 11)

Identity

Alias_namessolute carrier family 16 (monocarboxylic acid transporters), member 11
solute carrier family 16, member 11
Alias_symbol (synonym)FLJ90193
MCT11
Other alias
HGNC (Hugo) SLC16A11
LocusID (NCBI) 162515
Atlas_Id 73289
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 6944949 and ends at 6947242 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC16A11   23093
Cards
Entrez_Gene (NCBI)SLC16A11  162515  solute carrier family 16, member 11
AliasesMCT11
GeneCards (Weizmann)SLC16A11
Ensembl hg19 (Hinxton)ENSG00000174326 [Gene_View]  chr17:6944949-6947242 [Contig_View]  SLC16A11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174326 [Gene_View]  chr17:6944949-6947242 [Contig_View]  SLC16A11 [Vega]
ICGC DataPortalENSG00000174326
TCGA cBioPortalSLC16A11
AceView (NCBI)SLC16A11
Genatlas (Paris)SLC16A11
WikiGenes162515
SOURCE (Princeton)SLC16A11
Genetics Home Reference (NIH)SLC16A11
Genomic and cartography
GoldenPath hg19 (UCSC)SLC16A11  -     chr17:6944949-6947242 -  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC16A11  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblSLC16A11 - 17p13.1 [CytoView hg19]  SLC16A11 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBISLC16A11 [Mapview hg19]  SLC16A11 [Mapview hg38]
OMIM615765   
Gene and transcription
Genbank (Entrez)AK074674 BC093860 BC093886 BC143369
RefSeq transcript (Entrez)NM_153357
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)SLC16A11
Cluster EST : UnigeneHs.336564 [ NCBI ]
CGAP (NCI)Hs.336564
Alternative Splicing GalleryENSG00000174326
Gene ExpressionSLC16A11 [ NCBI-GEO ]   SLC16A11 [ EBI - ARRAY_EXPRESS ]   SLC16A11 [ SEEK ]   SLC16A11 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC16A11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162515
GTEX Portal (Tissue expression)SLC16A11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCK7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCK7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCK7
Splice isoforms : SwissVarQ8NCK7
PhosPhoSitePlusQ8NCK7
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MCT11    MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC16A11
DMDM Disease mutations162515
Blocks (Seattle)SLC16A11
SuperfamilyQ8NCK7
Human Protein AtlasENSG00000174326
Peptide AtlasQ8NCK7
HPRD11567
IPIIPI00176364   IPI00940713   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCK7
IntAct (EBI)Q8NCK7
FunCoupENSG00000174326
BioGRIDSLC16A11
STRING (EMBL)SLC16A11
ZODIACSLC16A11
Ontologies - Pathways
QuickGOQ8NCK7
Ontology : AmiGOendoplasmic reticulum membrane  lipid metabolic process  monocarboxylic acid transmembrane transporter activity  symporter activity  monocarboxylic acid transport  integral component of membrane  ion transmembrane transport  
Ontology : EGO-EBIendoplasmic reticulum membrane  lipid metabolic process  monocarboxylic acid transmembrane transporter activity  symporter activity  monocarboxylic acid transport  integral component of membrane  ion transmembrane transport  
NDEx NetworkSLC16A11
Atlas of Cancer Signalling NetworkSLC16A11
Wikipedia pathwaysSLC16A11
Orthology - Evolution
OrthoDB162515
GeneTree (enSembl)ENSG00000174326
Phylogenetic Trees/Animal Genes : TreeFamSLC16A11
HOVERGENQ8NCK7
HOGENOMQ8NCK7
Homologs : HomoloGeneSLC16A11
Homology/Alignments : Family Browser (UCSC)SLC16A11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC16A11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC16A11
dbVarSLC16A11
ClinVarSLC16A11
1000_GenomesSLC16A11 
Exome Variant ServerSLC16A11
ExAC (Exome Aggregation Consortium)SLC16A11 (select the gene name)
Genetic variants : HAPMAP162515
Genomic Variants (DGV)SLC16A11 [DGVbeta]
DECIPHER (Syndromes)17:6944949-6947242  ENSG00000174326
CONAN: Copy Number AnalysisSLC16A11 
Mutations
ICGC Data PortalSLC16A11 
TCGA Data PortalSLC16A11 
Broad Tumor PortalSLC16A11
OASIS PortalSLC16A11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC16A11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC16A11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC16A11
DgiDB (Drug Gene Interaction Database)SLC16A11
DoCM (Curated mutations)SLC16A11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC16A11 (select a term)
intoGenSLC16A11
Cancer3DSLC16A11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615765   
Orphanet
MedgenSLC16A11
Genetic Testing Registry SLC16A11
NextProtQ8NCK7 [Medical]
TSGene162515
GENETestsSLC16A11
Huge Navigator SLC16A11 [HugePedia]
snp3D : Map Gene to Disease162515
BioCentury BCIQSLC16A11
ClinGenSLC16A11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162515
Chemical/Pharm GKB GenePA134976903
Clinical trialSLC16A11
Miscellaneous
canSAR (ICR)SLC16A11 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC16A11
EVEXSLC16A11
GoPubMedSLC16A11
iHOPSLC16A11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:19 CET 2017

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