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SLC16A12 (solute carrier family 16 member 12)

Identity

Alias_namessolute carrier family 16 (monocarboxylic acid transporters), member 12
solute carrier family 16, member 12 (monocarboxylic acid transporter 12)
solute carrier family 16, member 12
Alias_symbol (synonym)MCT12
Other aliasCJMG
CRT2
CTRCT47
HGNC (Hugo) SLC16A12
LocusID (NCBI) 387700
Atlas_Id 73290
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 89430294 and ends at 89535556 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC16A12   23094
Cards
Entrez_Gene (NCBI)SLC16A12  387700  solute carrier family 16 member 12
AliasesCJMG; CRT2; CTRCT47; MCT12
GeneCards (Weizmann)SLC16A12
Ensembl hg19 (Hinxton)ENSG00000152779 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152779 [Gene_View]  chr10:89430294-89535556 [Contig_View]  SLC16A12 [Vega]
ICGC DataPortalENSG00000152779
TCGA cBioPortalSLC16A12
AceView (NCBI)SLC16A12
Genatlas (Paris)SLC16A12
WikiGenes387700
SOURCE (Princeton)SLC16A12
Genetics Home Reference (NIH)SLC16A12
Genomic and cartography
GoldenPath hg38 (UCSC)SLC16A12  -     chr10:89430294-89535556 -  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC16A12  -     10q23.31   [Description]    (hg19-Feb_2009)
EnsemblSLC16A12 - 10q23.31 [CytoView hg19]  SLC16A12 - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBISLC16A12 [Mapview hg19]  SLC16A12 [Mapview hg38]
OMIM611910   612018   
Gene and transcription
Genbank (Entrez)AK124901 AK127303 BC086873 BC172347 CB068043
RefSeq transcript (Entrez)NM_213606
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC16A12
Cluster EST : UnigeneHs.530338 [ NCBI ]
CGAP (NCI)Hs.530338
Alternative Splicing GalleryENSG00000152779
Gene ExpressionSLC16A12 [ NCBI-GEO ]   SLC16A12 [ EBI - ARRAY_EXPRESS ]   SLC16A12 [ SEEK ]   SLC16A12 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC16A12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387700
GTEX Portal (Tissue expression)SLC16A12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSM3
Splice isoforms : SwissVarQ6ZSM3
PhosPhoSitePlusQ6ZSM3
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC16A12
DMDM Disease mutations387700
Blocks (Seattle)SLC16A12
SuperfamilyQ6ZSM3
Human Protein AtlasENSG00000152779
Peptide AtlasQ6ZSM3
HPRD17365
IPIIPI00412702   IPI00872598   IPI00974115   IPI00977133   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSM3
IntAct (EBI)Q6ZSM3
FunCoupENSG00000152779
BioGRIDSLC16A12
STRING (EMBL)SLC16A12
ZODIACSLC16A12
Ontologies - Pathways
QuickGOQ6ZSM3
Ontology : AmiGOcreatine transmembrane transporter activity  integral component of plasma membrane  symporter activity  creatine transmembrane transport  
Ontology : EGO-EBIcreatine transmembrane transporter activity  integral component of plasma membrane  symporter activity  creatine transmembrane transport  
NDEx NetworkSLC16A12
Atlas of Cancer Signalling NetworkSLC16A12
Wikipedia pathwaysSLC16A12
Orthology - Evolution
OrthoDB387700
GeneTree (enSembl)ENSG00000152779
Phylogenetic Trees/Animal Genes : TreeFamSLC16A12
HOVERGENQ6ZSM3
HOGENOMQ6ZSM3
Homologs : HomoloGeneSLC16A12
Homology/Alignments : Family Browser (UCSC)SLC16A12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC16A12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC16A12
dbVarSLC16A12
ClinVarSLC16A12
1000_GenomesSLC16A12 
Exome Variant ServerSLC16A12
ExAC (Exome Aggregation Consortium)SLC16A12 (select the gene name)
Genetic variants : HAPMAP387700
Genomic Variants (DGV)SLC16A12 [DGVbeta]
DECIPHERSLC16A12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC16A12 
Mutations
ICGC Data PortalSLC16A12 
TCGA Data PortalSLC16A12 
Broad Tumor PortalSLC16A12
OASIS PortalSLC16A12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC16A12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC16A12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC16A12
DgiDB (Drug Gene Interaction Database)SLC16A12
DoCM (Curated mutations)SLC16A12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC16A12 (select a term)
intoGenSLC16A12
Cancer3DSLC16A12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611910    612018   
Orphanet19548   
MedgenSLC16A12
Genetic Testing Registry SLC16A12
NextProtQ6ZSM3 [Medical]
TSGene387700
GENETestsSLC16A12
Target ValidationSLC16A12
Huge Navigator SLC16A12 [HugePedia]
snp3D : Map Gene to Disease387700
BioCentury BCIQSLC16A12
ClinGenSLC16A12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387700
Chemical/Pharm GKB GenePA134969386
Clinical trialSLC16A12
Miscellaneous
canSAR (ICR)SLC16A12 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC16A12
EVEXSLC16A12
GoPubMedSLC16A12
iHOPSLC16A12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:53 CEST 2017

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