Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC16A13 (solute carrier family 16, member 13)

Identity

Alias_namessolute carrier family 16 (monocarboxylic acid transporters), member 13
solute carrier family 16, member 13
Alias_symbol (synonym)MCT13
Other alias
HGNC (Hugo) SLC16A13
LocusID (NCBI) 201232
Atlas_Id 73292
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 6939394 and ends at 6943440 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SLC16A13 (17p13.1) / JOSD1 (22q13.1)SLC35G6 (17p13.1) / SLC16A13 (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC16A13   31037
Cards
Entrez_Gene (NCBI)SLC16A13  201232  solute carrier family 16, member 13
AliasesMCT13
GeneCards (Weizmann)SLC16A13
Ensembl hg19 (Hinxton)ENSG00000174327 [Gene_View]  chr17:6939394-6943440 [Contig_View]  SLC16A13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174327 [Gene_View]  chr17:6939394-6943440 [Contig_View]  SLC16A13 [Vega]
ICGC DataPortalENSG00000174327
TCGA cBioPortalSLC16A13
AceView (NCBI)SLC16A13
Genatlas (Paris)SLC16A13
WikiGenes201232
SOURCE (Princeton)SLC16A13
Genetics Home Reference (NIH)SLC16A13
Genomic and cartography
GoldenPath hg19 (UCSC)SLC16A13  -     chr17:6939394-6943440 +  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC16A13  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblSLC16A13 - 17p13.1 [CytoView hg19]  SLC16A13 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBISLC16A13 [Mapview hg19]  SLC16A13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC109286 BC131739 BC142618 BN000145
RefSeq transcript (Entrez)NM_201566
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)SLC16A13
Cluster EST : UnigeneHs.448010 [ NCBI ]
CGAP (NCI)Hs.448010
Alternative Splicing GalleryENSG00000174327
Gene ExpressionSLC16A13 [ NCBI-GEO ]   SLC16A13 [ EBI - ARRAY_EXPRESS ]   SLC16A13 [ SEEK ]   SLC16A13 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC16A13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)201232
GTEX Portal (Tissue expression)SLC16A13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTY0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTY0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTY0
Splice isoforms : SwissVarQ7RTY0
PhosPhoSitePlusQ7RTY0
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC16A13
DMDM Disease mutations201232
Blocks (Seattle)SLC16A13
SuperfamilyQ7RTY0
Human Protein AtlasENSG00000174327
Peptide AtlasQ7RTY0
HPRD18054
IPIIPI00177969   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTY0
IntAct (EBI)Q7RTY0
FunCoupENSG00000174327
BioGRIDSLC16A13
STRING (EMBL)SLC16A13
ZODIACSLC16A13
Ontologies - Pathways
QuickGOQ7RTY0
Ontology : AmiGOGolgi membrane  Golgi apparatus  monocarboxylic acid transmembrane transporter activity  symporter activity  monocarboxylic acid transport  integral component of membrane  ion transmembrane transport  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  monocarboxylic acid transmembrane transporter activity  symporter activity  monocarboxylic acid transport  integral component of membrane  ion transmembrane transport  
NDEx NetworkSLC16A13
Atlas of Cancer Signalling NetworkSLC16A13
Wikipedia pathwaysSLC16A13
Orthology - Evolution
OrthoDB201232
GeneTree (enSembl)ENSG00000174327
Phylogenetic Trees/Animal Genes : TreeFamSLC16A13
HOVERGENQ7RTY0
HOGENOMQ7RTY0
Homologs : HomoloGeneSLC16A13
Homology/Alignments : Family Browser (UCSC)SLC16A13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC16A13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC16A13
dbVarSLC16A13
ClinVarSLC16A13
1000_GenomesSLC16A13 
Exome Variant ServerSLC16A13
ExAC (Exome Aggregation Consortium)SLC16A13 (select the gene name)
Genetic variants : HAPMAP201232
Genomic Variants (DGV)SLC16A13 [DGVbeta]
DECIPHER (Syndromes)17:6939394-6943440  ENSG00000174327
CONAN: Copy Number AnalysisSLC16A13 
Mutations
ICGC Data PortalSLC16A13 
TCGA Data PortalSLC16A13 
Broad Tumor PortalSLC16A13
OASIS PortalSLC16A13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC16A13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC16A13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC16A13
DgiDB (Drug Gene Interaction Database)SLC16A13
DoCM (Curated mutations)SLC16A13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC16A13 (select a term)
intoGenSLC16A13
Cancer3DSLC16A13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSLC16A13
Genetic Testing Registry SLC16A13
NextProtQ7RTY0 [Medical]
TSGene201232
GENETestsSLC16A13
Huge Navigator SLC16A13 [HugePedia]
snp3D : Map Gene to Disease201232
BioCentury BCIQSLC16A13
ClinGenSLC16A13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD201232
Chemical/Pharm GKB GenePA134991782
Clinical trialSLC16A13
Miscellaneous
canSAR (ICR)SLC16A13 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC16A13
EVEXSLC16A13
GoPubMedSLC16A13
iHOPSLC16A13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:19 CET 2017

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