Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC16A2 (solute carrier family 16 member 2)

Identity

Alias_namesDXS128
AHDS
MRX22
solute carrier family 16 (monocarboxylic acid transporters), member 2 (putative transporter)
Allan-Herndon-Dudley syndrome
solute carrier family 16 (monocarboxylic acid transporters), member 2
mental retardation, X-linked 22
solute carrier family 16, member 2 (monocarboxylic acid transporter 8)
solute carrier family 16, member 2 (thyroid hormone transporter)
Alias_symbol (synonym)XPCT
MCT8
MCT7
Other aliasDXS128E
MCT 7
MCT 8
HGNC (Hugo) SLC16A2
LocusID (NCBI) 6567
Atlas_Id 73295
Location Xq13.2  [Link to chromosome band Xq13]
Location_base_pair Starts at 74421493 and ends at 74533929 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KLHL5 (4p14) / SLC16A2 (Xq13.2)SLC16A2 (Xq13.2) / SLC16A2 (Xq13.2)SLC16A2 (Xq13.2) / ZNF16 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC16A2   10923
Cards
Entrez_Gene (NCBI)SLC16A2  6567  solute carrier family 16 member 2
AliasesAHDS; DXS128; DXS128E; MCT; 
MCT; MCT7; MCT8; MRX22; XPCT
GeneCards (Weizmann)SLC16A2
Ensembl hg19 (Hinxton)ENSG00000147100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147100 [Gene_View]  chrX:74421493-74533929 [Contig_View]  SLC16A2 [Vega]
ICGC DataPortalENSG00000147100
TCGA cBioPortalSLC16A2
AceView (NCBI)SLC16A2
Genatlas (Paris)SLC16A2
WikiGenes6567
SOURCE (Princeton)SLC16A2
Genetics Home Reference (NIH)SLC16A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC16A2  -     chrX:74421493-74533929 +  Xq13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC16A2  -     Xq13.2   [Description]    (hg19-Feb_2009)
EnsemblSLC16A2 - Xq13.2 [CytoView hg19]  SLC16A2 - Xq13.2 [CytoView hg38]
Mapping of homologs : NCBISLC16A2 [Mapview hg19]  SLC16A2 [Mapview hg38]
OMIM300095   300523   
Gene and transcription
Genbank (Entrez)AA205401 AB085789 AF055025 AK308542 AW022421
RefSeq transcript (Entrez)NM_006517
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC16A2
Cluster EST : UnigeneHs.75317 [ NCBI ]
CGAP (NCI)Hs.75317
Alternative Splicing GalleryENSG00000147100
Gene ExpressionSLC16A2 [ NCBI-GEO ]   SLC16A2 [ EBI - ARRAY_EXPRESS ]   SLC16A2 [ SEEK ]   SLC16A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC16A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6567
GTEX Portal (Tissue expression)SLC16A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP36021   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP36021  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP36021
Splice isoforms : SwissVarP36021
PhosPhoSitePlusP36021
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MCT8    MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC16A2
DMDM Disease mutations6567
Blocks (Seattle)SLC16A2
SuperfamilyP36021
Human Protein AtlasENSG00000147100
Peptide AtlasP36021
HPRD02106
IPIIPI00000655   
Protein Interaction databases
DIP (DOE-UCLA)P36021
IntAct (EBI)P36021
FunCoupENSG00000147100
BioGRIDSLC16A2
STRING (EMBL)SLC16A2
ZODIACSLC16A2
Ontologies - Pathways
QuickGOP36021
Ontology : AmiGOtransporter activity  plasma membrane  plasma membrane  integral component of plasma membrane  transport  monocarboxylic acid transmembrane transporter activity  symporter activity  thyroid hormone transmembrane transporter activity  thyroid hormone transmembrane transporter activity  monocarboxylic acid transport  sodium-independent organic anion transport  transmembrane transport  thyroid hormone transport  
Ontology : EGO-EBItransporter activity  plasma membrane  plasma membrane  integral component of plasma membrane  transport  monocarboxylic acid transmembrane transporter activity  symporter activity  thyroid hormone transmembrane transporter activity  thyroid hormone transmembrane transporter activity  monocarboxylic acid transport  sodium-independent organic anion transport  transmembrane transport  thyroid hormone transport  
Pathways : KEGGThyroid hormone signaling pathway   
NDEx NetworkSLC16A2
Atlas of Cancer Signalling NetworkSLC16A2
Wikipedia pathwaysSLC16A2
Orthology - Evolution
OrthoDB6567
GeneTree (enSembl)ENSG00000147100
Phylogenetic Trees/Animal Genes : TreeFamSLC16A2
HOVERGENP36021
HOGENOMP36021
Homologs : HomoloGeneSLC16A2
Homology/Alignments : Family Browser (UCSC)SLC16A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC16A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC16A2
dbVarSLC16A2
ClinVarSLC16A2
1000_GenomesSLC16A2 
Exome Variant ServerSLC16A2
ExAC (Exome Aggregation Consortium)SLC16A2 (select the gene name)
Genetic variants : HAPMAP6567
Genomic Variants (DGV)SLC16A2 [DGVbeta]
DECIPHERSLC16A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC16A2 
Mutations
ICGC Data PortalSLC16A2 
TCGA Data PortalSLC16A2 
Broad Tumor PortalSLC16A2
OASIS PortalSLC16A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC16A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC16A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch SLC16A2
DgiDB (Drug Gene Interaction Database)SLC16A2
DoCM (Curated mutations)SLC16A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC16A2 (select a term)
intoGenSLC16A2
Cancer3DSLC16A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300095    300523   
Orphanet1315   
MedgenSLC16A2
Genetic Testing Registry SLC16A2
NextProtP36021 [Medical]
TSGene6567
GENETestsSLC16A2
Target ValidationSLC16A2
Huge Navigator SLC16A2 [HugePedia]
snp3D : Map Gene to Disease6567
BioCentury BCIQSLC16A2
ClinGenSLC16A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6567
Chemical/Pharm GKB GenePA35814
Clinical trialSLC16A2
Miscellaneous
canSAR (ICR)SLC16A2 (select the gene name)
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC16A2
EVEXSLC16A2
GoPubMedSLC16A2
iHOPSLC16A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:54 CEST 2017

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