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SLC16A4 (solute carrier family 16 member 4)

Identity

Alias_namessolute carrier family 16 (monocarboxylic acid transporters), member 4
solute carrier family 16, member 4 (monocarboxylic acid transporter 5)
solute carrier family 16, member 4
Alias_symbol (synonym)MCT4
MCT5
Other alias
HGNC (Hugo) SLC16A4
LocusID (NCBI) 9122
Atlas_Id 43681
Location 1p13.3  [Link to chromosome band 1p13]
Location_base_pair Starts at 110362851 and ends at 110391082 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC16A4   10925
Cards
Entrez_Gene (NCBI)SLC16A4  9122  solute carrier family 16 member 4
AliasesMCT4; MCT5
GeneCards (Weizmann)SLC16A4
Ensembl hg19 (Hinxton)ENSG00000168679 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168679 [Gene_View]  chr1:110362851-110391082 [Contig_View]  SLC16A4 [Vega]
ICGC DataPortalENSG00000168679
TCGA cBioPortalSLC16A4
AceView (NCBI)SLC16A4
Genatlas (Paris)SLC16A4
WikiGenes9122
SOURCE (Princeton)SLC16A4
Genetics Home Reference (NIH)SLC16A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC16A4  -     chr1:110362851-110391082 -  1p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC16A4  -     1p13.3   [Description]    (hg19-Feb_2009)
EnsemblSLC16A4 - 1p13.3 [CytoView hg19]  SLC16A4 - 1p13.3 [CytoView hg38]
Mapping of homologs : NCBISLC16A4 [Mapview hg19]  SLC16A4 [Mapview hg38]
OMIM603878   
Gene and transcription
Genbank (Entrez)AI245349 AK129985 AK223307 AK290720 AK295946
RefSeq transcript (Entrez)NM_001201546 NM_001201547 NM_001201548 NM_001201549 NM_001319220 NM_004696
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC16A4
Cluster EST : UnigeneHs.351306 [ NCBI ]
CGAP (NCI)Hs.351306
Alternative Splicing GalleryENSG00000168679
Gene ExpressionSLC16A4 [ NCBI-GEO ]   SLC16A4 [ EBI - ARRAY_EXPRESS ]   SLC16A4 [ SEEK ]   SLC16A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC16A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9122
GTEX Portal (Tissue expression)SLC16A4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15374   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15374  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15374
Splice isoforms : SwissVarO15374
PhosPhoSitePlusO15374
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC16A4
DMDM Disease mutations9122
Blocks (Seattle)SLC16A4
SuperfamilyO15374
Human Protein AtlasENSG00000168679
Peptide AtlasO15374
HPRD04855
IPIIPI00006183   IPI00978904   IPI00910037   IPI00102807   IPI00877072   IPI00982570   IPI00978279   
Protein Interaction databases
DIP (DOE-UCLA)O15374
IntAct (EBI)O15374
FunCoupENSG00000168679
BioGRIDSLC16A4
STRING (EMBL)SLC16A4
ZODIACSLC16A4
Ontologies - Pathways
QuickGOO15374
Ontology : AmiGOintegral component of plasma membrane  monocarboxylic acid transmembrane transporter activity  symporter activity  monocarboxylic acid transport  membrane  transmembrane transport  
Ontology : EGO-EBIintegral component of plasma membrane  monocarboxylic acid transmembrane transporter activity  symporter activity  monocarboxylic acid transport  membrane  transmembrane transport  
NDEx NetworkSLC16A4
Atlas of Cancer Signalling NetworkSLC16A4
Wikipedia pathwaysSLC16A4
Orthology - Evolution
OrthoDB9122
GeneTree (enSembl)ENSG00000168679
Phylogenetic Trees/Animal Genes : TreeFamSLC16A4
HOVERGENO15374
HOGENOMO15374
Homologs : HomoloGeneSLC16A4
Homology/Alignments : Family Browser (UCSC)SLC16A4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC16A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC16A4
dbVarSLC16A4
ClinVarSLC16A4
1000_GenomesSLC16A4 
Exome Variant ServerSLC16A4
ExAC (Exome Aggregation Consortium)SLC16A4 (select the gene name)
Genetic variants : HAPMAP9122
Genomic Variants (DGV)SLC16A4 [DGVbeta]
DECIPHERSLC16A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC16A4 
Mutations
ICGC Data PortalSLC16A4 
TCGA Data PortalSLC16A4 
Broad Tumor PortalSLC16A4
OASIS PortalSLC16A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC16A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC16A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC16A4
DgiDB (Drug Gene Interaction Database)SLC16A4
DoCM (Curated mutations)SLC16A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC16A4 (select a term)
intoGenSLC16A4
Cancer3DSLC16A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603878   
Orphanet
MedgenSLC16A4
Genetic Testing Registvy ,/TD>SLC16A4
NextProtO15374 [Medical]
TSGene9122
GENETestsSLC16A4
Target ValidationSLC16A4
Huge Navigator SLC16A4 [HugePedia]
snp3D : Map Gene to Disease9122
BioCentury BCIQSLC16A4
ClinGenSLC16A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9122
Chemical/Pharm GKB GenePA35816
Clinical trialSLC16A4
Miscellaneous
canSAR (ICR)SLC16A4 (select the gene name)
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC16A4
EVEXSLC16A4
GoPubMedSLC16A4
iHOPSLC16A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:31:18 CEST 2017

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