Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC16A5 (solute carrier family 16 member 5)

Identity

Alias_namessolute carrier family 16 (monocarboxylic acid transporters), member 5
solute carrier family 16, member 5 (monocarboxylic acid transporter 6)
solute carrier family 16 (monocarboxylate transporter), member 5
Alias_symbol (synonym)MCT5
MCT6
Other alias
HGNC (Hugo) SLC16A5
LocusID (NCBI) 9121
Atlas_Id 56272
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75087727 and ends at 75106160 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1QL1 (17q21.31) / SLC16A5 (17q25.1)ITGB4 (17q25.1) / SLC16A5 (17q25.1)SLC16A5 (17q25.1) / ICT1 (17q25.1)
SLC16A5 (17q25.1) / OTOP2 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC16A5   10926
Cards
Entrez_Gene (NCBI)SLC16A5  9121  solute carrier family 16 member 5
AliasesMCT5; MCT6
GeneCards (Weizmann)SLC16A5
Ensembl hg19 (Hinxton)ENSG00000170190 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170190 [Gene_View]  chr17:75087727-75106160 [Contig_View]  SLC16A5 [Vega]
ICGC DataPortalENSG00000170190
TCGA cBioPortalSLC16A5
AceView (NCBI)SLC16A5
Genatlas (Paris)SLC16A5
WikiGenes9121
SOURCE (Princeton)SLC16A5
Genetics Home Reference (NIH)SLC16A5
Genomic and cartography
GoldenPath hg38 (UCSC)SLC16A5  -     chr17:75087727-75106160 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC16A5  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblSLC16A5 - 17q25.1 [CytoView hg19]  SLC16A5 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBISLC16A5 [Mapview hg19]  SLC16A5 [Mapview hg38]
OMIM603879   
Gene and transcription
Genbank (Entrez)AK000416 AK092512 AK304163 AW452009 BC009684
RefSeq transcript (Entrez)NM_001271765 NM_004695
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC16A5
Cluster EST : UnigeneHs.592095 [ NCBI ]
CGAP (NCI)Hs.592095
Alternative Splicing GalleryENSG00000170190
Gene ExpressionSLC16A5 [ NCBI-GEO ]   SLC16A5 [ EBI - ARRAY_EXPRESS ]   SLC16A5 [ SEEK ]   SLC16A5 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC16A5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9121
GTEX Portal (Tissue expression)SLC16A5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15375   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15375  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15375
Splice isoforms : SwissVarO15375
PhosPhoSitePlusO15375
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MCT    MCT6    MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC16A5
DMDM Disease mutations9121
Blocks (Seattle)SLC16A5
SuperfamilyO15375
Human Protein AtlasENSG00000170190
Peptide AtlasO15375
HPRD04856
IPIIPI00006184   IPI00910466   
Protein Interaction databases
DIP (DOE-UCLA)O15375
IntAct (EBI)O15375
FunCoupENSG00000170190
BioGRIDSLC16A5
STRING (EMBL)SLC16A5
ZODIACSLC16A5
Ontologies - Pathways
QuickGOO15375
Ontology : AmiGOintegral component of plasma membrane  monocarboxylic acid transmembrane transporter activity  symporter activity  monocarboxylic acid transport  membrane  transmembrane transport  
Ontology : EGO-EBIintegral component of plasma membrane  monocarboxylic acid transmembrane transporter activity  symporter activity  monocarboxylic acid transport  membrane  transmembrane transport  
NDEx NetworkSLC16A5
Atlas of Cancer Signalling NetworkSLC16A5
Wikipedia pathwaysSLC16A5
Orthology - Evolution
OrthoDB9121
GeneTree (enSembl)ENSG00000170190
Phylogenetic Trees/Animal Genes : TreeFamSLC16A5
HOVERGENO15375
HOGENOMO15375
Homologs : HomoloGeneSLC16A5
Homology/Alignments : Family Browser (UCSC)SLC16A5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC16A5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC16A5
dbVarSLC16A5
ClinVarSLC16A5
1000_GenomesSLC16A5 
Exome Variant ServerSLC16A5
ExAC (Exome Aggregation Consortium)SLC16A5 (select the gene name)
Genetic variants : HAPMAP9121
Genomic Variants (DGV)SLC16A5 [DGVbeta]
DECIPHERSLC16A5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC16A5 
Mutations
ICGC Data PortalSLC16A5 
TCGA Data PortalSLC16A5 
Broad Tumor PortalSLC16A5
OASIS PortalSLC16A5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC16A5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC16A5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC16A5
DgiDB (Drug Gene Interaction Database)SLC16A5
DoCM (Curated mutations)SLC16A5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC16A5 (select a term)
intoGenSLC16A5
Cancer3DSLC16A5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603879   
Orphanet
MedgenSLC16A5
Genetic Testing Registry SLC16A5
NextProtO15375 [Medical]
TSGene9121
GENETestsSLC16A5
Huge Navigator SLC16A5 [HugePedia]
snp3D : Map Gene to Disease9121
BioCentury BCIQSLC16A5
ClinGenSLC16A5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9121
Chemical/Pharm GKB GenePA35817
Clinical trialSLC16A5
Miscellaneous
canSAR (ICR)SLC16A5 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC16A5
EVEXSLC16A5
GoPubMedSLC16A5
iHOPSLC16A5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:37:25 CEST 2017

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