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SLC16A6 (solute carrier family 16 member 6)

Identity

Alias_namessolute carrier family 16 (monocarboxylic acid transporters), member 6
solute carrier family 16, member 6 (monocarboxylic acid transporter 7)
solute carrier family 16, member 6
Alias_symbol (synonym)MCT6
MCT7
Other alias
HGNC (Hugo) SLC16A6
LocusID (NCBI) 9120
Atlas_Id 73297
Location 17q24.2  [Link to chromosome band 17q24]
Location_base_pair Starts at 68267026 and ends at 68291264 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC16A6   10927
Cards
Entrez_Gene (NCBI)SLC16A6  9120  solute carrier family 16 member 6
AliasesMCT6; MCT7
GeneCards (Weizmann)SLC16A6
Ensembl hg19 (Hinxton)ENSG00000108932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108932 [Gene_View]  chr17:68267026-68291264 [Contig_View]  SLC16A6 [Vega]
ICGC DataPortalENSG00000108932
TCGA cBioPortalSLC16A6
AceView (NCBI)SLC16A6
Genatlas (Paris)SLC16A6
WikiGenes9120
SOURCE (Princeton)SLC16A6
Genetics Home Reference (NIH)SLC16A6
Genomic and cartography
GoldenPath hg38 (UCSC)SLC16A6  -     chr17:68267026-68291264 -  17q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC16A6  -     17q24.2   [Description]    (hg19-Feb_2009)
EnsemblSLC16A6 - 17q24.2 [CytoView hg19]  SLC16A6 - 17q24.2 [CytoView hg38]
Mapping of homologs : NCBISLC16A6 [Mapview hg19]  SLC16A6 [Mapview hg38]
OMIM603880   
Gene and transcription
Genbank (Entrez)AK290417 AK313121 AX750581 AX750582 BC064832
RefSeq transcript (Entrez)NM_001174166 NM_004694
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC16A6
Cluster EST : UnigeneHs.42645 [ NCBI ]
CGAP (NCI)Hs.42645
Alternative Splicing GalleryENSG00000108932
Gene ExpressionSLC16A6 [ NCBI-GEO ]   SLC16A6 [ EBI - ARRAY_EXPRESS ]   SLC16A6 [ SEEK ]   SLC16A6 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC16A6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9120
GTEX Portal (Tissue expression)SLC16A6
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15403   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15403  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15403
Splice isoforms : SwissVarO15403
PhosPhoSitePlusO15403
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MCT7    MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC16A6
DMDM Disease mutations9120
Blocks (Seattle)SLC16A6
SuperfamilyO15403
Human Protein AtlasENSG00000108932
Peptide AtlasO15403
HPRD04857
IPIIPI00006620   
Protein Interaction databases
DIP (DOE-UCLA)O15403
IntAct (EBI)O15403
FunCoupENSG00000108932
BioGRIDSLC16A6
STRING (EMBL)SLC16A6
ZODIACSLC16A6
Ontologies - Pathways
QuickGOO15403
Ontology : AmiGOintegral component of plasma membrane  monocarboxylic acid transmembrane transporter activity  symporter activity  monocarboxylic acid transport  membrane  transmembrane transport  
Ontology : EGO-EBIintegral component of plasma membrane  monocarboxylic acid transmembrane transporter activity  symporter activity  monocarboxylic acid transport  membrane  transmembrane transport  
NDEx NetworkSLC16A6
Atlas of Cancer Signalling NetworkSLC16A6
Wikipedia pathwaysSLC16A6
Orthology - Evolution
OrthoDB9120
GeneTree (enSembl)ENSG00000108932
Phylogenetic Trees/Animal Genes : TreeFamSLC16A6
HOVERGENO15403
HOGENOMO15403
Homologs : HomoloGeneSLC16A6
Homology/Alignments : Family Browser (UCSC)SLC16A6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC16A6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC16A6
dbVarSLC16A6
ClinVarSLC16A6
1000_GenomesSLC16A6 
Exome Variant ServerSLC16A6
ExAC (Exome Aggregation Consortium)SLC16A6 (select the gene name)
Genetic variants : HAPMAP9120
Genomic Variants (DGV)SLC16A6 [DGVbeta]
DECIPHERSLC16A6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC16A6 
Mutations
ICGC Data PortalSLC16A6 
TCGA Data PortalSLC16A6 
Broad Tumor PortalSLC16A6
OASIS PortalSLC16A6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC16A6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC16A6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC16A6
DgiDB (Drug Gene Interaction Database)SLC16A6
DoCM (Curated mutations)SLC16A6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC16A6 (select a term)
intoGenSLC16A6
Cancer3DSLC16A6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603880   
Orphanet
MedgenSLC16A6
Genetic Testing Registry SLC16A6
NextProtO15403 [Medical]
TSGene9120
GENETestsSLC16A6
Target ValidationSLC16A6
Huge Navigator SLC16A6 [HugePedia]
snp3D : Map Gene to Disease9120
BioCentury BCIQSLC16A6
ClinGenSLC16A6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9120
Chemical/Pharm GKB GenePA35818
Clinical trialSLC16A6
Miscellaneous
canSAR (ICR)SLC16A6 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC16A6
EVEXSLC16A6
GoPubMedSLC16A6
iHOPSLC16A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:37:55 CEST 2017

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