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SLC16A8 (solute carrier family 16 (monocarboxylate transporter), member 8)

Identity

Alias_namessolute carrier 16 (monocarboxylic acid transporters), member 8
solute carrier family 16 (monocarboxylate transporter), member 8
Alias_symbol (synonym)MCT3
REMP
Other alias
HGNC (Hugo) SLC16A8
LocusID (NCBI) 23539
Atlas_Id 73298
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 38474144 and ends at 38479170 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC16A8   16270
Cards
Entrez_Gene (NCBI)SLC16A8  23539  solute carrier family 16 (monocarboxylate transporter), member 8
AliasesMCT3; REMP
GeneCards (Weizmann)SLC16A8
Ensembl hg19 (Hinxton)ENSG00000100156 [Gene_View]  chr22:38474144-38479170 [Contig_View]  SLC16A8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000100156 [Gene_View]  chr22:38474144-38479170 [Contig_View]  SLC16A8 [Vega]
ICGC DataPortalENSG00000100156
TCGA cBioPortalSLC16A8
AceView (NCBI)SLC16A8
Genatlas (Paris)SLC16A8
WikiGenes23539
SOURCE (Princeton)SLC16A8
Genetics Home Reference (NIH)SLC16A8
Genomic and cartography
GoldenPath hg19 (UCSC)SLC16A8  -     chr22:38474144-38479170 -  22q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC16A8  -     22q13.1   [Description]    (hg38-Dec_2013)
EnsemblSLC16A8 - 22q13.1 [CytoView hg19]  SLC16A8 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBISLC16A8 [Mapview hg19]  SLC16A8 [Mapview hg38]
OMIM610409   
Gene and transcription
Genbank (Entrez)AF132610 BC156246 BC157026 BM709138 BM714896
RefSeq transcript (Entrez)NM_013356
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)SLC16A8
Cluster EST : UnigeneHs.745256 [ NCBI ]
CGAP (NCI)Hs.745256
Alternative Splicing GalleryENSG00000100156
Gene ExpressionSLC16A8 [ NCBI-GEO ]   SLC16A8 [ EBI - ARRAY_EXPRESS ]   SLC16A8 [ SEEK ]   SLC16A8 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC16A8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23539
GTEX Portal (Tissue expression)SLC16A8
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95907   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95907  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95907
Splice isoforms : SwissVarO95907
PhosPhoSitePlusO95907
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MCT    MCT3    MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC16A8
DMDM Disease mutations23539
Blocks (Seattle)SLC16A8
SuperfamilyO95907
Human Protein AtlasENSG00000100156
Peptide AtlasO95907
HPRD11568
IPIIPI00296004   IPI00892679   
Protein Interaction databases
DIP (DOE-UCLA)O95907
IntAct (EBI)O95907
FunCoupENSG00000100156
BioGRIDSLC16A8
STRING (EMBL)SLC16A8
ZODIACSLC16A8
Ontologies - Pathways
QuickGOO95907
Ontology : AmiGOplasma membrane  integral component of plasma membrane  pyruvate metabolic process  blood coagulation  lactate transmembrane transporter activity  symporter activity  lactate transport  membrane  plasma membrane lactate transport  cellular metabolic process  small molecule metabolic process  leukocyte migration  transmembrane transport  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  pyruvate metabolic process  blood coagulation  lactate transmembrane transporter activity  symporter activity  lactate transport  membrane  plasma membrane lactate transport  cellular metabolic process  small molecule metabolic process  leukocyte migration  transmembrane transport  
NDEx NetworkSLC16A8
Atlas of Cancer Signalling NetworkSLC16A8
Wikipedia pathwaysSLC16A8
Orthology - Evolution
OrthoDB23539
GeneTree (enSembl)ENSG00000100156
Phylogenetic Trees/Animal Genes : TreeFamSLC16A8
HOVERGENO95907
HOGENOMO95907
Homologs : HomoloGeneSLC16A8
Homology/Alignments : Family Browser (UCSC)SLC16A8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC16A8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC16A8
dbVarSLC16A8
ClinVarSLC16A8
1000_GenomesSLC16A8 
Exome Variant ServerSLC16A8
ExAC (Exome Aggregation Consortium)SLC16A8 (select the gene name)
Genetic variants : HAPMAP23539
Genomic Variants (DGV)SLC16A8 [DGVbeta]
DECIPHER (Syndromes)22:38474144-38479170  ENSG00000100156
CONAN: Copy Number AnalysisSLC16A8 
Mutations
ICGC Data PortalSLC16A8 
TCGA Data PortalSLC16A8 
Broad Tumor PortalSLC16A8
OASIS PortalSLC16A8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC16A8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC16A8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC16A8
DgiDB (Drug Gene Interaction Database)SLC16A8
DoCM (Curated mutations)SLC16A8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC16A8 (select a term)
intoGenSLC16A8
Cancer3DSLC16A8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610409   
Orphanet
MedgenSLC16A8
Genetic Testing Registry SLC16A8
NextProtO95907 [Medical]
TSGene23539
GENETestsSLC16A8
Huge Navigator SLC16A8 [HugePedia]
snp3D : Map Gene to Disease23539
BioCentury BCIQSLC16A8
ClinGenSLC16A8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23539
Chemical/Pharm GKB GenePA38106
Clinical trialSLC16A8
Miscellaneous
canSAR (ICR)SLC16A8 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC16A8
EVEXSLC16A8
GoPubMedSLC16A8
iHOPSLC16A8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:20 CET 2017

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