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SLC16A9 (solute carrier family 16, member 9)

Identity

Alias_namesC10orf36
chromosome 10 open reading frame 36
solute carrier family 16 (monocarboxylic acid transporters), member 9
solute carrier family 16, member 9 (monocarboxylic acid transporter 9)
solute carrier family 16, member 9
Alias_symbol (synonym)FLJ43803
MCT9
Other alias
HGNC (Hugo) SLC16A9
LocusID (NCBI) 220963
Atlas_Id 73299
Location 10q21.2  [Link to chromosome band 10q21]
Location_base_pair Starts at 61410522 and ends at 61469649 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CSGALNACT2 (10q11.21) / SLC16A9 (10q21.2)PDE4D (5q11.2) / SLC16A9 (10q21.2)SLC16A9 (10q21.2) / ADK (10q22.2)
SLC16A9 (10q21.2) / ANK3 (10q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC16A9   23520
Cards
Entrez_Gene (NCBI)SLC16A9  220963  solute carrier family 16, member 9
AliasesC10orf36; MCT9
GeneCards (Weizmann)SLC16A9
Ensembl hg19 (Hinxton)ENSG00000165449 [Gene_View]  chr10:61410522-61469649 [Contig_View]  SLC16A9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165449 [Gene_View]  chr10:61410522-61469649 [Contig_View]  SLC16A9 [Vega]
ICGC DataPortalENSG00000165449
TCGA cBioPortalSLC16A9
AceView (NCBI)SLC16A9
Genatlas (Paris)SLC16A9
WikiGenes220963
SOURCE (Princeton)SLC16A9
Genetics Home Reference (NIH)SLC16A9
Genomic and cartography
GoldenPath hg19 (UCSC)SLC16A9  -     chr10:61410522-61469649 -  10q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC16A9  -     10q21.2   [Description]    (hg38-Dec_2013)
EnsemblSLC16A9 - 10q21.2 [CytoView hg19]  SLC16A9 - 10q21.2 [CytoView hg38]
Mapping of homologs : NCBISLC16A9 [Mapview hg19]  SLC16A9 [Mapview hg38]
OMIM614242   
Gene and transcription
Genbank (Entrez)AK021827 AK125791 AK172758 AL122071 BC126238
RefSeq transcript (Entrez)NM_194298
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)SLC16A9
Cluster EST : UnigeneHs.499709 [ NCBI ]
CGAP (NCI)Hs.499709
Alternative Splicing GalleryENSG00000165449
Gene ExpressionSLC16A9 [ NCBI-GEO ]   SLC16A9 [ EBI - ARRAY_EXPRESS ]   SLC16A9 [ SEEK ]   SLC16A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC16A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220963
GTEX Portal (Tissue expression)SLC16A9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTY1
Splice isoforms : SwissVarQ7RTY1
PhosPhoSitePlusQ7RTY1
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MCT9    MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC16A9
DMDM Disease mutations220963
Blocks (Seattle)SLC16A9
SuperfamilyQ7RTY1
Human Protein AtlasENSG00000165449
Peptide AtlasQ7RTY1
HPRD15348
IPIIPI00375582   IPI00977362   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTY1
IntAct (EBI)Q7RTY1
FunCoupENSG00000165449
BioGRIDSLC16A9
STRING (EMBL)SLC16A9
ZODIACSLC16A9
Ontologies - Pathways
QuickGOQ7RTY1
Ontology : AmiGOprotein binding  plasma membrane  monocarboxylic acid transmembrane transporter activity  symporter activity  monocarboxylic acid transport  integral component of membrane  ion transmembrane transport  urate metabolic process  
Ontology : EGO-EBIprotein binding  plasma membrane  monocarboxylic acid transmembrane transporter activity  symporter activity  monocarboxylic acid transport  integral component of membrane  ion transmembrane transport  urate metabolic process  
NDEx NetworkSLC16A9
Atlas of Cancer Signalling NetworkSLC16A9
Wikipedia pathwaysSLC16A9
Orthology - Evolution
OrthoDB220963
GeneTree (enSembl)ENSG00000165449
Phylogenetic Trees/Animal Genes : TreeFamSLC16A9
HOVERGENQ7RTY1
HOGENOMQ7RTY1
Homologs : HomoloGeneSLC16A9
Homology/Alignments : Family Browser (UCSC)SLC16A9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC16A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC16A9
dbVarSLC16A9
ClinVarSLC16A9
1000_GenomesSLC16A9 
Exome Variant ServerSLC16A9
ExAC (Exome Aggregation Consortium)SLC16A9 (select the gene name)
Genetic variants : HAPMAP220963
Genomic Variants (DGV)SLC16A9 [DGVbeta]
DECIPHER (Syndromes)10:61410522-61469649  ENSG00000165449
CONAN: Copy Number AnalysisSLC16A9 
Mutations
ICGC Data PortalSLC16A9 
TCGA Data PortalSLC16A9 
Broad Tumor PortalSLC16A9
OASIS PortalSLC16A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC16A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC16A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC16A9
DgiDB (Drug Gene Interaction Database)SLC16A9
DoCM (Curated mutations)SLC16A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC16A9 (select a term)
intoGenSLC16A9
Cancer3DSLC16A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614242   
Orphanet
MedgenSLC16A9
Genetic Testing Registry SLC16A9
NextProtQ7RTY1 [Medical]
TSGene220963
GENETestsSLC16A9
Huge Navigator SLC16A9 [HugePedia]
snp3D : Map Gene to Disease220963
BioCentury BCIQSLC16A9
ClinGenSLC16A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220963
Chemical/Pharm GKB GenePA134991247
Clinical trialSLC16A9
Miscellaneous
canSAR (ICR)SLC16A9 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC16A9
EVEXSLC16A9
GoPubMedSLC16A9
iHOPSLC16A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:21 CET 2017

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