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SLC17A1 (solute carrier family 17 member 1)

Identity

Alias_namesNPT1
solute carrier family 17 (sodium phosphate), member 1
solute carrier family 17 (organic anion transporter), member 1
Alias_symbol (synonym)NAPI-1
Other aliasNPT-1
HGNC (Hugo) SLC17A1
LocusID (NCBI) 6568
Atlas_Id 73300
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 25782898 and ends at 25832059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LRRC16A (6p22.2) / SLC17A1 (6p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC17A1   10929
Cards
Entrez_Gene (NCBI)SLC17A1  6568  solute carrier family 17 member 1
AliasesNAPI-1; NPT-1; NPT1
GeneCards (Weizmann)SLC17A1
Ensembl hg19 (Hinxton)ENSG00000124568 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124568 [Gene_View]  chr6:25782898-25832059 [Contig_View]  SLC17A1 [Vega]
ICGC DataPortalENSG00000124568
TCGA cBioPortalSLC17A1
AceView (NCBI)SLC17A1
Genatlas (Paris)SLC17A1
WikiGenes6568
SOURCE (Princeton)SLC17A1
Genetics Home Reference (NIH)SLC17A1
Genomic and cartography
GoldenPath hg38 (UCSC)SLC17A1  -     chr6:25782898-25832059 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC17A1  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblSLC17A1 - 6p22.2 [CytoView hg19]  SLC17A1 - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBISLC17A1 [Mapview hg19]  SLC17A1 [Mapview hg38]
OMIM182308   
Gene and transcription
Genbank (Entrez)AK290783 AK308035 AY780791 BC101745 BC101747
RefSeq transcript (Entrez)NM_005074
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC17A1
Cluster EST : UnigeneHs.205816 [ NCBI ]
CGAP (NCI)Hs.205816
Alternative Splicing GalleryENSG00000124568
Gene ExpressionSLC17A1 [ NCBI-GEO ]   SLC17A1 [ EBI - ARRAY_EXPRESS ]   SLC17A1 [ SEEK ]   SLC17A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC17A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6568
GTEX Portal (Tissue expression)SLC17A1
Human Protein AtlasENSG00000124568-SLC17A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14916   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14916  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14916
Splice isoforms : SwissVarQ14916
PhosPhoSitePlusQ14916
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    Pi_cotranspt   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC17A1
DMDM Disease mutations6568
Blocks (Seattle)SLC17A1
SuperfamilyQ14916
Human Protein Atlas [tissue]ENSG00000124568-SLC17A1 [tissue]
Peptide AtlasQ14916
HPRD01661
IPIIPI00796747   IPI00902854   IPI00945162   
Protein Interaction databases
DIP (DOE-UCLA)Q14916
IntAct (EBI)Q14916
FunCoupENSG00000124568
BioGRIDSLC17A1
STRING (EMBL)SLC17A1
ZODIACSLC17A1
Ontologies - Pathways
QuickGOQ14916
Ontology : AmiGOsodium:phosphate symporter activity  plasma membrane  integral component of plasma membrane  ion transport  phosphate ion transport  sodium-dependent phosphate transmembrane transporter activity  membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  sodium-dependent phosphate transport  urate metabolic process  
Ontology : EGO-EBIsodium:phosphate symporter activity  plasma membrane  integral component of plasma membrane  ion transport  phosphate ion transport  sodium-dependent phosphate transmembrane transporter activity  membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  sodium-dependent phosphate transport  urate metabolic process  
NDEx NetworkSLC17A1
Atlas of Cancer Signalling NetworkSLC17A1
Wikipedia pathwaysSLC17A1
Orthology - Evolution
OrthoDB6568
GeneTree (enSembl)ENSG00000124568
Phylogenetic Trees/Animal Genes : TreeFamSLC17A1
HOVERGENQ14916
HOGENOMQ14916
Homologs : HomoloGeneSLC17A1
Homology/Alignments : Family Browser (UCSC)SLC17A1
Gene fusions - Rearrangements
Tumor Fusion PortalSLC17A1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC17A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC17A1
dbVarSLC17A1
ClinVarSLC17A1
1000_GenomesSLC17A1 
Exome Variant ServerSLC17A1
ExAC (Exome Aggregation Consortium)ENSG00000124568
GNOMAD BrowserENSG00000124568
Genetic variants : HAPMAP6568
Genomic Variants (DGV)SLC17A1 [DGVbeta]
DECIPHERSLC17A1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC17A1 
Mutations
ICGC Data PortalSLC17A1 
TCGA Data PortalSLC17A1 
Broad Tumor PortalSLC17A1
OASIS PortalSLC17A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC17A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC17A1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC17A1
DgiDB (Drug Gene Interaction Database)SLC17A1
DoCM (Curated mutations)SLC17A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC17A1 (select a term)
intoGenSLC17A1
Cancer3DSLC17A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182308   
Orphanet
DisGeNETSLC17A1
MedgenSLC17A1
Genetic Testing Registry SLC17A1
NextProtQ14916 [Medical]
TSGene6568
GENETestsSLC17A1
Target ValidationSLC17A1
Huge Navigator SLC17A1 [HugePedia]
snp3D : Map Gene to Disease6568
BioCentury BCIQSLC17A1
ClinGenSLC17A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6568
Chemical/Pharm GKB GenePA35820
Clinical trialSLC17A1
Miscellaneous
canSAR (ICR)SLC17A1 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC17A1
EVEXSLC17A1
GoPubMedSLC17A1
iHOPSLC17A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:15:10 CET 2017

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