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SLC17A2 (solute carrier family 17 member 2)

Identity

Alias_namessolute carrier family 17 (sodium phosphate), member 2
solute carrier family 17, member 2
Alias_symbol (synonym)NPT3
Other alias
HGNC (Hugo) SLC17A2
LocusID (NCBI) 10246
Atlas_Id 73301
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 25912756 and ends at 25925879 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC17A2   10930
Cards
Entrez_Gene (NCBI)SLC17A2  10246  solute carrier family 17 member 2
AliasesNPT3
GeneCards (Weizmann)SLC17A2
Ensembl hg19 (Hinxton)ENSG00000112337 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112337 [Gene_View]  chr6:25912756-25925879 [Contig_View]  SLC17A2 [Vega]
ICGC DataPortalENSG00000112337
TCGA cBioPortalSLC17A2
AceView (NCBI)SLC17A2
Genatlas (Paris)SLC17A2
WikiGenes10246
SOURCE (Princeton)SLC17A2
Genetics Home Reference (NIH)SLC17A2
Genomic and cartography
GoldenPath hg38 (UCSC)SLC17A2  -     chr6:25912756-25925879 -  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC17A2  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblSLC17A2 - 6p22.2 [CytoView hg19]  SLC17A2 - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBISLC17A2 [Mapview hg19]  SLC17A2 [Mapview hg38]
OMIM611049   
Gene and transcription
Genbank (Entrez)BC104822 BC112033 BC143317 BC143323 BJ993843
RefSeq transcript (Entrez)NM_001286123 NM_001286125 NM_005835
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC17A2
Cluster EST : UnigeneHs.591802 [ NCBI ]
CGAP (NCI)Hs.591802
Alternative Splicing GalleryENSG00000112337
Gene ExpressionSLC17A2 [ NCBI-GEO ]   SLC17A2 [ EBI - ARRAY_EXPRESS ]   SLC17A2 [ SEEK ]   SLC17A2 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC17A2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10246
GTEX Portal (Tissue expression)SLC17A2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00624   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00624  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00624
Splice isoforms : SwissVarO00624
PhosPhoSitePlusO00624
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC17A2
DMDM Disease mutations10246
Blocks (Seattle)SLC17A2
SuperfamilyO00624
Human Protein AtlasENSG00000112337
Peptide AtlasO00624
HPRD10232
IPIIPI00012574   IPI00065045   
Protein Interaction databases
DIP (DOE-UCLA)O00624
IntAct (EBI)O00624
FunCoupENSG00000112337
BioGRIDSLC17A2
STRING (EMBL)SLC17A2
ZODIACSLC17A2
Ontologies - Pathways
QuickGOO00624
Ontology : AmiGOsodium:phosphate symporter activity  integral component of plasma membrane  phosphate-containing compound metabolic process  sodium ion transport  membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  
Ontology : EGO-EBIsodium:phosphate symporter activity  integral component of plasma membrane  phosphate-containing compound metabolic process  sodium ion transport  membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  
NDEx NetworkSLC17A2
Atlas of Cancer Signalling NetworkSLC17A2
Wikipedia pathwaysSLC17A2
Orthology - Evolution
OrthoDB10246
GeneTree (enSembl)ENSG00000112337
Phylogenetic Trees/Animal Genes : TreeFamSLC17A2
HOVERGENO00624
HOGENOMO00624
Homologs : HomoloGeneSLC17A2
Homology/Alignments : Family Browser (UCSC)SLC17A2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC17A2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC17A2
dbVarSLC17A2
ClinVarSLC17A2
1000_GenomesSLC17A2 
Exome Variant ServerSLC17A2
ExAC (Exome Aggregation Consortium)SLC17A2 (select the gene name)
Genetic variants : HAPMAP10246
Genomic Variants (DGV)SLC17A2 [DGVbeta]
DECIPHERSLC17A2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC17A2 
Mutations
ICGC Data PortalSLC17A2 
TCGA Data PortalSLC17A2 
Broad Tumor PortalSLC17A2
OASIS PortalSLC17A2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC17A2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC17A2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC17A2
DgiDB (Drug Gene Interaction Database)SLC17A2
DoCM (Curated mutations)SLC17A2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC17A2 (select a term)
intoGenSLC17A2
Cancer3DSLC17A2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611049   
Orphanet
MedgenSLC17A2
Genetic Testing Registry SLC17A2
NextProtO00624 [Medical]
TSGene10246
GENETestsSLC17A2
Target ValidationSLC17A2
Huge Navigator SLC17A2 [HugePedia]
snp3D : Map Gene to Disease10246
BioCentury BCIQSLC17A2
ClinGenSLC17A2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10246
Chemical/Pharm GKB GenePA35821
Clinical trialSLC17A2
Miscellaneous
canSAR (ICR)SLC17A2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC17A2
EVEXSLC17A2
GoPubMedSLC17A2
iHOPSLC17A2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:40:55 CEST 2017

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