Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC17A3 (solute carrier family 17 (organic anion transporter), member 3)

Identity

Alias_namessolute carrier family 17 (sodium phosphate), member 3
solute carrier family 17 (organic anion transporter), member 3
Alias_symbol (synonym)NPT4
Other alias
HGNC (Hugo) SLC17A3
LocusID (NCBI) 10786
Atlas_Id 73302
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 25845328 and ends at 25874471 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC17A3   10931
Cards
Entrez_Gene (NCBI)SLC17A3  10786  solute carrier family 17 (organic anion transporter), member 3
AliasesNPT4
GeneCards (Weizmann)SLC17A3
Ensembl hg19 (Hinxton)ENSG00000124564 [Gene_View]  chr6:25845328-25874471 [Contig_View]  SLC17A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000124564 [Gene_View]  chr6:25845328-25874471 [Contig_View]  SLC17A3 [Vega]
ICGC DataPortalENSG00000124564
TCGA cBioPortalSLC17A3
AceView (NCBI)SLC17A3
Genatlas (Paris)SLC17A3
WikiGenes10786
SOURCE (Princeton)SLC17A3
Genetics Home Reference (NIH)SLC17A3
Genomic and cartography
GoldenPath hg19 (UCSC)SLC17A3  -     chr6:25845328-25874471 -  6p22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC17A3  -     6p22.2   [Description]    (hg38-Dec_2013)
EnsemblSLC17A3 - 6p22.2 [CytoView hg19]  SLC17A3 - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBISLC17A3 [Mapview hg19]  SLC17A3 [Mapview hg38]
OMIM611034   612671   
Gene and transcription
Genbank (Entrez)AK296070 AK296082 AK298271 AK298297 AK298367
RefSeq transcript (Entrez)NM_001098486 NM_006632
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_032922 NT_007592 NW_004929326
Consensus coding sequences : CCDS (NCBI)SLC17A3
Cluster EST : UnigeneHs.327179 [ NCBI ]
CGAP (NCI)Hs.327179
Alternative Splicing GalleryENSG00000124564
Gene ExpressionSLC17A3 [ NCBI-GEO ]   SLC17A3 [ EBI - ARRAY_EXPRESS ]   SLC17A3 [ SEEK ]   SLC17A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC17A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10786
GTEX Portal (Tissue expression)SLC17A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00476   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00476  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00476
Splice isoforms : SwissVarO00476
PhosPhoSitePlusO00476
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    Na-dep_P-transpt_4_prd   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC17A3
DMDM Disease mutations10786
Blocks (Seattle)SLC17A3
SuperfamilyO00476
Human Protein AtlasENSG00000124564
Peptide AtlasO00476
HPRD10233
IPIIPI00465027   IPI00014076   IPI00645004   IPI00965756   IPI00965657   
Protein Interaction databases
DIP (DOE-UCLA)O00476
IntAct (EBI)O00476
FunCoupENSG00000124564
BioGRIDSLC17A3
STRING (EMBL)SLC17A3
ZODIACSLC17A3
Ontologies - Pathways
QuickGOO00476
Ontology : AmiGOsodium:phosphate symporter activity  sodium:phosphate symporter activity  cytoplasm  endoplasmic reticulum membrane  endoplasmic reticulum membrane  plasma membrane  integral component of plasma membrane  sodium ion transport  phosphate ion transport  drug transmembrane transport  voltage-gated anion channel activity  organic anion transmembrane transporter activity  urate transmembrane transporter activity  drug transmembrane transporter activity  sodium-dependent phosphate transmembrane transporter activity  efflux transmembrane transporter activity  organic anion transport  urate transport  glucose-6-phosphate transport  drug transport  apical plasma membrane  toxin transporter activity  brush border membrane  ion transmembrane transport  phosphate ion transmembrane transport  sodium ion transmembrane transport  sodium-dependent phosphate transport  urate metabolic process  perinuclear region of cytoplasm  transmembrane transport  toxin transport  organic acid transmembrane transport  regulation of anion transmembrane transport  
Ontology : EGO-EBIsodium:phosphate symporter activity  sodium:phosphate symporter activity  cytoplasm  endoplasmic reticulum membrane  endoplasmic reticulum membrane  plasma membrane  integral component of plasma membrane  sodium ion transport  phosphate ion transport  drug transmembrane transport  voltage-gated anion channel activity  organic anion transmembrane transporter activity  urate transmembrane transporter activity  drug transmembrane transporter activity  sodium-dependent phosphate transmembrane transporter activity  efflux transmembrane transporter activity  organic anion transport  urate transport  glucose-6-phosphate transport  drug transport  apical plasma membrane  toxin transporter activity  brush border membrane  ion transmembrane transport  phosphate ion transmembrane transport  sodium ion transmembrane transport  sodium-dependent phosphate transport  urate metabolic process  perinuclear region of cytoplasm  transmembrane transport  toxin transport  organic acid transmembrane transport  regulation of anion transmembrane transport  
NDEx NetworkSLC17A3
Atlas of Cancer Signalling NetworkSLC17A3
Wikipedia pathwaysSLC17A3
Orthology - Evolution
OrthoDB10786
GeneTree (enSembl)ENSG00000124564
Phylogenetic Trees/Animal Genes : TreeFamSLC17A3
HOVERGENO00476
HOGENOMO00476
Homologs : HomoloGeneSLC17A3
Homology/Alignments : Family Browser (UCSC)SLC17A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC17A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC17A3
dbVarSLC17A3
ClinVarSLC17A3
1000_GenomesSLC17A3 
Exome Variant ServerSLC17A3
ExAC (Exome Aggregation Consortium)SLC17A3 (select the gene name)
Genetic variants : HAPMAP10786
Genomic Variants (DGV)SLC17A3 [DGVbeta]
DECIPHER (Syndromes)6:25845328-25874471  ENSG00000124564
CONAN: Copy Number AnalysisSLC17A3 
Mutations
ICGC Data PortalSLC17A3 
TCGA Data PortalSLC17A3 
Broad Tumor PortalSLC17A3
OASIS PortalSLC17A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC17A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC17A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC17A3
DgiDB (Drug Gene Interaction Database)SLC17A3
DoCM (Curated mutations)SLC17A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC17A3 (select a term)
intoGenSLC17A3
Cancer3DSLC17A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611034    612671   
Orphanet
MedgenSLC17A3
Genetic Testing Registry SLC17A3
NextProtO00476 [Medical]
TSGene10786
GENETestsSLC17A3
Huge Navigator SLC17A3 [HugePedia]
snp3D : Map Gene to Disease10786
BioCentury BCIQSLC17A3
ClinGenSLC17A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10786
Chemical/Pharm GKB GenePA35822
Clinical trialSLC17A3
Miscellaneous
canSAR (ICR)SLC17A3 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC17A3
EVEXSLC17A3
GoPubMedSLC17A3
iHOPSLC17A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:43:21 CET 2017

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