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SLC17A4 (solute carrier family 17 member 4)

Identity

Alias_namessolute carrier family 17 (sodium phosphate), member 4
solute carrier family 17, member 4
Alias_symbol (synonym)KIAA2138
Other aliasKAIA2138
HGNC (Hugo) SLC17A4
LocusID (NCBI) 10050
Atlas_Id 73303
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 25754699 and ends at 25781175 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HIST1H2AC (6p22.2) / SLC17A4 (6p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(p22;p22) HIST1H2AC/SLC17A4


External links

Nomenclature
HGNC (Hugo)SLC17A4   10932
Cards
Entrez_Gene (NCBI)SLC17A4  10050  solute carrier family 17 member 4
AliasesKAIA2138
GeneCards (Weizmann)SLC17A4
Ensembl hg19 (Hinxton)ENSG00000146039 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146039 [Gene_View]  ENSG00000146039 [Sequence]  chr6:25754699-25781175 [Contig_View]  SLC17A4 [Vega]
ICGC DataPortalENSG00000146039
TCGA cBioPortalSLC17A4
AceView (NCBI)SLC17A4
Genatlas (Paris)SLC17A4
WikiGenes10050
SOURCE (Princeton)SLC17A4
Genetics Home Reference (NIH)SLC17A4
Genomic and cartography
GoldenPath hg38 (UCSC)SLC17A4  -     chr6:25754699-25781175 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC17A4  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblSLC17A4 - 6p22.2 [CytoView hg19]  SLC17A4 - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBISLC17A4 [Mapview hg19]  SLC17A4 [Mapview hg38]
OMIM604216   
Gene and transcription
Genbank (Entrez)AB020527 AK024903 AK293354 AK308500 BC109207
RefSeq transcript (Entrez)NM_001286121 NM_005495
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC17A4
Cluster EST : UnigeneHs.282931 [ NCBI ]
CGAP (NCI)Hs.282931
Alternative Splicing GalleryENSG00000146039
Gene ExpressionSLC17A4 [ NCBI-GEO ]   SLC17A4 [ EBI - ARRAY_EXPRESS ]   SLC17A4 [ SEEK ]   SLC17A4 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC17A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10050
GTEX Portal (Tissue expression)SLC17A4
Human Protein AtlasENSG00000146039-SLC17A4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2C5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2C5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2C5
Splice isoforms : SwissVarQ9Y2C5
PhosPhoSitePlusQ9Y2C5
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC17A4
DMDM Disease mutations10050
Blocks (Seattle)SLC17A4
SuperfamilyQ9Y2C5
Human Protein Atlas [tissue]ENSG00000146039-SLC17A4 [tissue]
Peptide AtlasQ9Y2C5
HPRD05022
IPIIPI00023208   IPI00885151   IPI00909761   IPI00655568   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2C5
IntAct (EBI)Q9Y2C5
FunCoupENSG00000146039
BioGRIDSLC17A4
STRING (EMBL)SLC17A4
ZODIACSLC17A4
Ontologies - Pathways
QuickGOQ9Y2C5
Ontology : AmiGOsodium:phosphate symporter activity  integral component of plasma membrane  phosphate-containing compound metabolic process  sodium ion transport  membrane  apical plasma membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  
Ontology : EGO-EBIsodium:phosphate symporter activity  integral component of plasma membrane  phosphate-containing compound metabolic process  sodium ion transport  membrane  apical plasma membrane  phosphate ion transmembrane transport  sodium ion transmembrane transport  
NDEx NetworkSLC17A4
Atlas of Cancer Signalling NetworkSLC17A4
Wikipedia pathwaysSLC17A4
Orthology - Evolution
OrthoDB10050
GeneTree (enSembl)ENSG00000146039
Phylogenetic Trees/Animal Genes : TreeFamSLC17A4
HOVERGENQ9Y2C5
HOGENOMQ9Y2C5
Homologs : HomoloGeneSLC17A4
Homology/Alignments : Family Browser (UCSC)SLC17A4
Gene fusions - Rearrangements
Fusion : QuiverSLC17A4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC17A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC17A4
dbVarSLC17A4
ClinVarSLC17A4
1000_GenomesSLC17A4 
Exome Variant ServerSLC17A4
ExAC (Exome Aggregation Consortium)ENSG00000146039
GNOMAD BrowserENSG00000146039
Varsome BrowserSLC17A4
Genetic variants : HAPMAP10050
Genomic Variants (DGV)SLC17A4 [DGVbeta]
DECIPHERSLC17A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC17A4 
Mutations
ICGC Data PortalSLC17A4 
TCGA Data PortalSLC17A4 
Broad Tumor PortalSLC17A4
OASIS PortalSLC17A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC17A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC17A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC17A4
DgiDB (Drug Gene Interaction Database)SLC17A4
DoCM (Curated mutations)SLC17A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC17A4 (select a term)
intoGenSLC17A4
Cancer3DSLC17A4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604216   
Orphanet
DisGeNETSLC17A4
MedgenSLC17A4
Genetic Testing Registry SLC17A4
NextProtQ9Y2C5 [Medical]
TSGene10050
GENETestsSLC17A4
Target ValidationSLC17A4
Huge Navigator SLC17A4 [HugePedia]
snp3D : Map Gene to Disease10050
BioCentury BCIQSLC17A4
ClinGenSLC17A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10050
Chemical/Pharm GKB GenePA35823
Clinical trialSLC17A4
Miscellaneous
canSAR (ICR)SLC17A4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC17A4
EVEXSLC17A4
GoPubMedSLC17A4
iHOPSLC17A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:29:08 CEST 2018

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