Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC17A9 (solute carrier family 17 member 9)

Identity

Alias_namesC20orf59
chromosome 20 open reading frame 59
solute carrier family 17, member 9
solute carrier family 17 (vesicular nucleotide transporter), member 9
Alias_symbol (synonym)FLJ23412
VNUT
Other aliasPOROK8
HGNC (Hugo) SLC17A9
LocusID (NCBI) 63910
Atlas_Id 73307
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62952647 and ends at 62968597 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC17A9   16192
Cards
Entrez_Gene (NCBI)SLC17A9  63910  solute carrier family 17 member 9
AliasesC20orf59; POROK8; VNUT
GeneCards (Weizmann)SLC17A9
Ensembl hg19 (Hinxton)ENSG00000101194 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101194 [Gene_View]  chr20:62952647-62968597 [Contig_View]  SLC17A9 [Vega]
ICGC DataPortalENSG00000101194
TCGA cBioPortalSLC17A9
AceView (NCBI)SLC17A9
Genatlas (Paris)SLC17A9
WikiGenes63910
SOURCE (Princeton)SLC17A9
Genetics Home Reference (NIH)SLC17A9
Genomic and cartography
GoldenPath hg38 (UCSC)SLC17A9  -     chr20:62952647-62968597 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SLC17A9  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblSLC17A9 - 20q13.33 [CytoView hg19]  SLC17A9 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBISLC17A9 [Mapview hg19]  SLC17A9 [Mapview hg38]
OMIM612107   616063   
Gene and transcription
Genbank (Entrez)AK027065 AK074107 AK095473 AK125597 AK298503
RefSeq transcript (Entrez)NM_001302643 NM_022082
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC17A9
Cluster EST : UnigeneHs.512686 [ NCBI ]
CGAP (NCI)Hs.512686
Alternative Splicing GalleryENSG00000101194
Gene ExpressionSLC17A9 [ NCBI-GEO ]   SLC17A9 [ EBI - ARRAY_EXPRESS ]   SLC17A9 [ SEEK ]   SLC17A9 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC17A9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63910
GTEX Portal (Tissue expression)SLC17A9
Human Protein AtlasENSG00000101194-SLC17A9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYT1
Splice isoforms : SwissVarQ9BYT1
PhosPhoSitePlusQ9BYT1
Domaine pattern : Prosite (Expaxy)MFS (PS50850)    SUGAR_TRANSPORT_2 (PS00217)   
Domains : Interpro (EBI)MFS    MFS_dom    Sugar_transporter_CS   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC17A9
DMDM Disease mutations63910
Blocks (Seattle)SLC17A9
SuperfamilyQ9BYT1
Human Protein Atlas [tissue]ENSG00000101194-SLC17A9 [tissue]
Peptide AtlasQ9BYT1
HPRD12777
IPIIPI00413481   IPI00001151   IPI00152768   IPI00386113   IPI00478028   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYT1
IntAct (EBI)Q9BYT1
FunCoupENSG00000101194
BioGRIDSLC17A9
STRING (EMBL)SLC17A9
ZODIACSLC17A9
Ontologies - Pathways
QuickGOQ9BYT1
Ontology : AmiGOanion transport  exocytosis  integral component of membrane  transmembrane transporter activity  transmembrane transport  regulation of mitophagy  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIanion transport  exocytosis  integral component of membrane  transmembrane transporter activity  transmembrane transport  regulation of mitophagy  positive regulation of protein targeting to mitochondrion  
NDEx NetworkSLC17A9
Atlas of Cancer Signalling NetworkSLC17A9
Wikipedia pathwaysSLC17A9
Orthology - Evolution
OrthoDB63910
GeneTree (enSembl)ENSG00000101194
Phylogenetic Trees/Animal Genes : TreeFamSLC17A9
HOVERGENQ9BYT1
HOGENOMQ9BYT1
Homologs : HomoloGeneSLC17A9
Homology/Alignments : Family Browser (UCSC)SLC17A9
Gene fusions - Rearrangements
Tumor Fusion PortalSLC17A9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC17A9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC17A9
dbVarSLC17A9
ClinVarSLC17A9
1000_GenomesSLC17A9 
Exome Variant ServerSLC17A9
ExAC (Exome Aggregation Consortium)ENSG00000101194
GNOMAD BrowserENSG00000101194
Genetic variants : HAPMAP63910
Genomic Variants (DGV)SLC17A9 [DGVbeta]
DECIPHERSLC17A9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSLC17A9 
Mutations
ICGC Data PortalSLC17A9 
TCGA Data PortalSLC17A9 
Broad Tumor PortalSLC17A9
OASIS PortalSLC17A9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC17A9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC17A9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC17A9
DgiDB (Drug Gene Interaction Database)SLC17A9
DoCM (Curated mutations)SLC17A9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC17A9 (select a term)
intoGenSLC17A9
Cancer3DSLC17A9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612107    616063   
Orphanet11178   
DisGeNETSLC17A9
MedgenSLC17A9
Genetic Testing Registry SLC17A9
NextProtQ9BYT1 [Medical]
TSGene63910
GENETestsSLC17A9
Target ValidationSLC17A9
Huge Navigator SLC17A9 [HugePedia]
snp3D : Map Gene to Disease63910
BioCentury BCIQSLC17A9
ClinGenSLC17A9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63910
Chemical/Pharm GKB GenePA164725806
Clinical trialSLC17A9
Miscellaneous
canSAR (ICR)SLC17A9 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC17A9
EVEXSLC17A9
GoPubMedSLC17A9
iHOPSLC17A9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:13 CET 2017

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