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SLC18A1 (solute carrier family 18 member A1)

Identity

Other aliasCGAT
VAT1
VMAT1
HGNC (Hugo) SLC18A1
LocusID (NCBI) 6570
Atlas_Id 56662
Location 8p21.3  [Link to chromosome band 8p21]
Location_base_pair Starts at 20002366 and ends at 20040717 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC18A1   10934
Cards
Entrez_Gene (NCBI)SLC18A1  6570  solute carrier family 18 member A1
AliasesCGAT; VAT1; VMAT1
GeneCards (Weizmann)SLC18A1
Ensembl hg19 (Hinxton) [Gene_View]  chr8:20002366-20040717 [Contig_View]  SLC18A1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:20002366-20040717 [Contig_View]  SLC18A1 [Vega]
TCGA cBioPortalSLC18A1
AceView (NCBI)SLC18A1
Genatlas (Paris)SLC18A1
WikiGenes6570
SOURCE (Princeton)SLC18A1
Genetics Home Reference (NIH)SLC18A1
Genomic and cartography
GoldenPath hg19 (UCSC)SLC18A1  -     chr8:20002366-20040717 -  8p21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC18A1  -     8p21.3   [Description]    (hg38-Dec_2013)
EnsemblSLC18A1 - 8p21.3 [CytoView hg19]  SLC18A1 - 8p21.3 [CytoView hg38]
Mapping of homologs : NCBISLC18A1 [Mapview hg19]  SLC18A1 [Mapview hg38]
OMIM193002   
Gene and transcription
Genbank (Entrez)AK313720 BC006317 BC009387 DQ892730 DQ893445
RefSeq transcript (Entrez)NM_001135691 NM_001142324 NM_001142325 NM_003053
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SLC18A1
Cluster EST : UnigeneHs.158322 [ NCBI ]
CGAP (NCI)Hs.158322
Gene ExpressionSLC18A1 [ NCBI-GEO ]   SLC18A1 [ EBI - ARRAY_EXPRESS ]   SLC18A1 [ SEEK ]   SLC18A1 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC18A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6570
GTEX Portal (Tissue expression)SLC18A1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP54219   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP54219  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP54219
Splice isoforms : SwissVarP54219
PhosPhoSitePlusP54219
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    Multidrug-R   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC18A1
DMDM Disease mutations6570
Blocks (Seattle)SLC18A1
SuperfamilyP54219
Peptide AtlasP54219
IPIIPI00005423   IPI00332277   IPI00939367   IPI00973867   IPI00797877   
Protein Interaction databases
DIP (DOE-UCLA)P54219
IntAct (EBI)P54219
BioGRIDSLC18A1
STRING (EMBL)SLC18A1
ZODIACSLC18A1
Ontologies - Pathways
QuickGOP54219
Ontology : AmiGOendoplasmic reticulum membrane  integral component of plasma membrane  serotonin transport  drug transmembrane transport  chemical synaptic transmission  monoamine transmembrane transporter activity  serotonin transmembrane transporter activity  drug transmembrane transporter activity  aminergic neurotransmitter loading into synaptic vesicle  monoamine transport  synaptic vesicle membrane  terminal bouton  clathrin-sculpted monoamine transport vesicle membrane  
Ontology : EGO-EBIendoplasmic reticulum membrane  integral component of plasma membrane  serotonin transport  drug transmembrane transport  chemical synaptic transmission  monoamine transmembrane transporter activity  serotonin transmembrane transporter activity  drug transmembrane transporter activity  aminergic neurotransmitter loading into synaptic vesicle  monoamine transport  synaptic vesicle membrane  terminal bouton  clathrin-sculpted monoamine transport vesicle membrane  
Pathways : KEGGSynaptic vesicle cycle    Serotonergic synapse    Dopaminergic synapse    Parkinson's disease    Cocaine addiction    Amphetamine addiction    Alcoholism   
NDEx NetworkSLC18A1
Atlas of Cancer Signalling NetworkSLC18A1
Wikipedia pathwaysSLC18A1
Orthology - Evolution
OrthoDB6570
Phylogenetic Trees/Animal Genes : TreeFamSLC18A1
HOVERGENP54219
HOGENOMP54219
Homologs : HomoloGeneSLC18A1
Homology/Alignments : Family Browser (UCSC)SLC18A1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC18A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC18A1
dbVarSLC18A1
ClinVarSLC18A1
1000_GenomesSLC18A1 
Exome Variant ServerSLC18A1
ExAC (Exome Aggregation Consortium)SLC18A1 (select the gene name)
Genetic variants : HAPMAP6570
Genomic Variants (DGV)SLC18A1 [DGVbeta]
DECIPHER (Syndromes)8:20002366-20040717  
CONAN: Copy Number AnalysisSLC18A1 
Mutations
ICGC Data PortalSLC18A1 
TCGA Data PortalSLC18A1 
Broad Tumor PortalSLC18A1
OASIS PortalSLC18A1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC18A1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC18A1
BioMutasearch SLC18A1
DgiDB (Drug Gene Interaction Database)SLC18A1
DoCM (Curated mutations)SLC18A1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC18A1 (select a term)
intoGenSLC18A1
Cancer3DSLC18A1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM193002   
Orphanet
MedgenSLC18A1
Genetic Testing Registry SLC18A1
NextProtP54219 [Medical]
TSGene6570
GENETestsSLC18A1
Huge Navigator SLC18A1 [HugePedia]
snp3D : Map Gene to Disease6570
BioCentury BCIQSLC18A1
ClinGenSLC18A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6570
Chemical/Pharm GKB GenePA324
Clinical trialSLC18A1
Miscellaneous
canSAR (ICR)SLC18A1 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC18A1
EVEXSLC18A1
GoPubMedSLC18A1
iHOPSLC18A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:27:32 CET 2017

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