Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SLC18A3 (solute carrier family 18 (vesicular acetylcholine transporter), member 3)

Identity

Alias_namessolute carrier family 18 (vesicular acetylcholine transporter), member 3
Alias_symbol (synonym)VACHT
Other alias
HGNC (Hugo) SLC18A3
LocusID (NCBI) 6572
Atlas_Id 73309
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 50818347 and ends at 50820766 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SLC18A3   10936
Cards
Entrez_Gene (NCBI)SLC18A3  6572  solute carrier family 18 (vesicular acetylcholine transporter), member 3
AliasesVACHT
GeneCards (Weizmann)SLC18A3
Ensembl hg19 (Hinxton)ENSG00000187714 [Gene_View]  chr10:50818347-50820766 [Contig_View]  SLC18A3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187714 [Gene_View]  chr10:50818347-50820766 [Contig_View]  SLC18A3 [Vega]
ICGC DataPortalENSG00000187714
TCGA cBioPortalSLC18A3
AceView (NCBI)SLC18A3
Genatlas (Paris)SLC18A3
WikiGenes6572
SOURCE (Princeton)SLC18A3
Genetics Home Reference (NIH)SLC18A3
Genomic and cartography
GoldenPath hg19 (UCSC)SLC18A3  -     chr10:50818347-50820766 +  10q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SLC18A3  -     10q11.23   [Description]    (hg38-Dec_2013)
EnsemblSLC18A3 - 10q11.23 [CytoView hg19]  SLC18A3 - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBISLC18A3 [Mapview hg19]  SLC18A3 [Mapview hg38]
OMIM600336   
Gene and transcription
Genbank (Entrez)AK313094 BC007765 JF432245 U09210
RefSeq transcript (Entrez)NM_003055
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_011797 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)SLC18A3
Cluster EST : UnigeneHs.654374 [ NCBI ]
CGAP (NCI)Hs.654374
Alternative Splicing GalleryENSG00000187714
Gene ExpressionSLC18A3 [ NCBI-GEO ]   SLC18A3 [ EBI - ARRAY_EXPRESS ]   SLC18A3 [ SEEK ]   SLC18A3 [ MEM ]
Gene Expression Viewer (FireBrowse)SLC18A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6572
GTEX Portal (Tissue expression)SLC18A3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16572   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16572  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16572
Splice isoforms : SwissVarQ16572
PhosPhoSitePlusQ16572
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)SLC18A3
DMDM Disease mutations6572
Blocks (Seattle)SLC18A3
SuperfamilyQ16572
Human Protein AtlasENSG00000187714
Peptide AtlasQ16572
HPRD08979
IPIIPI00017623   
Protein Interaction databases
DIP (DOE-UCLA)Q16572
IntAct (EBI)Q16572
FunCoupENSG00000187714
BioGRIDSLC18A3
STRING (EMBL)SLC18A3
ZODIACSLC18A3
Ontologies - Pathways
QuickGOQ16572
Ontology : AmiGOacetylcholine transmembrane transporter activity  plasma membrane  integral component of plasma membrane  synaptic transmission  neurotransmitter secretion  acetylcholine transport  membrane  clathrin-sculpted acetylcholine transport vesicle membrane  ammonium transmembrane transport  cation transmembrane transport  
Ontology : EGO-EBIacetylcholine transmembrane transporter activity  plasma membrane  integral component of plasma membrane  synaptic transmission  neurotransmitter secretion  acetylcholine transport  membrane  clathrin-sculpted acetylcholine transport vesicle membrane  ammonium transmembrane transport  cation transmembrane transport  
Pathways : KEGGSynaptic vesicle cycle    Cholinergic synapse   
NDEx NetworkSLC18A3
Atlas of Cancer Signalling NetworkSLC18A3
Wikipedia pathwaysSLC18A3
Orthology - Evolution
OrthoDB6572
GeneTree (enSembl)ENSG00000187714
Phylogenetic Trees/Animal Genes : TreeFamSLC18A3
HOVERGENQ16572
HOGENOMQ16572
Homologs : HomoloGeneSLC18A3
Homology/Alignments : Family Browser (UCSC)SLC18A3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSLC18A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SLC18A3
dbVarSLC18A3
ClinVarSLC18A3
1000_GenomesSLC18A3 
Exome Variant ServerSLC18A3
ExAC (Exome Aggregation Consortium)SLC18A3 (select the gene name)
Genetic variants : HAPMAP6572
Genomic Variants (DGV)SLC18A3 [DGVbeta]
DECIPHER (Syndromes)10:50818347-50820766  ENSG00000187714
CONAN: Copy Number AnalysisSLC18A3 
Mutations
ICGC Data PortalSLC18A3 
TCGA Data PortalSLC18A3 
Broad Tumor PortalSLC18A3
OASIS PortalSLC18A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSLC18A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSLC18A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SLC18A3
DgiDB (Drug Gene Interaction Database)SLC18A3
DoCM (Curated mutations)SLC18A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SLC18A3 (select a term)
intoGenSLC18A3
Cancer3DSLC18A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600336   
Orphanet
MedgenSLC18A3
Genetic Testing Registry SLC18A3
NextProtQ16572 [Medical]
TSGene6572
GENETestsSLC18A3
Huge Navigator SLC18A3 [HugePedia]
snp3D : Map Gene to Disease6572
BioCentury BCIQSLC18A3
ClinGenSLC18A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6572
Chemical/Pharm GKB GenePA326
Clinical trialSLC18A3
Miscellaneous
canSAR (ICR)SLC18A3 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSLC18A3
EVEXSLC18A3
GoPubMedSLC18A3
iHOPSLC18A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:43:23 CET 2017

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